PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G36780.2
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family CAMTA
Protein Properties Length: 851aa    MW: 95948.9 Da    PI: 6.54
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G36780.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1175.95.4e-55141312118
             CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptf 94 
                      ++e k+rwlk++e+++iL+n++++++t++++++p sg+++L+nr+++ryfr+DGy+w+kkk+gkt+ E+he+LKv++v++l+cyYah+++nptf
  LPERR01G36780.2  14 QQEvKSRWLKPTEVLQILQNHDRFTITNKTPHKPASGAWFLFNRRVLRYFRNDGYEWRKKKNGKTIAEAHERLKVDNVDALNCYYAHADKNPTF 107
                      56779***************************************************************************************** PP

             CG-1  95 qrrcywlLeeelekivlvhylevk 118
                      qrr+yw+L+ ++e+iv+vhy++v+
  LPERR01G36780.2 108 QRRIYWILDPAYEHIVFVHYRDVQ 131
                      *********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143777.58410136IPR005559CG-1 DNA-binding domain
SMARTSM010761.4E-7113131IPR005559CG-1 DNA-binding domain
PfamPF038591.5E-4817130IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.101.2E-5314400IPR013783Immunoglobulin-like fold
SuperFamilySSF812961.6E-13315398IPR014756Immunoglobulin E-set
SuperFamilySSF484038.71E-15519614IPR020683Ankyrin repeat-containing domain
PfamPF136374.1E-9522574No hitNo description
CDDcd002049.50E-10525612No hitNo description
Gene3DG3DSA:1.25.40.202.1E-16525616IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.804525585IPR020683Ankyrin repeat-containing domain
SMARTSM002489.5E-4553582IPR002110Ankyrin repeat
PROSITE profilePS5008811.194553585IPR002110Ankyrin repeat
SMARTSM0001540669691IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500966.943670699IPR000048IQ motif, EF-hand binding site
SMARTSM000150.012714736IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.181715744IPR000048IQ motif, EF-hand binding site
PfamPF006120.013716735IPR000048IQ motif, EF-hand binding site
SMARTSM000150.83737759IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.187738766IPR000048IQ motif, EF-hand binding site
PfamPF006120.05739759IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 851 aa     Download sequence    Send to blast
MQSQQQGFDT HKLQQEVKSR WLKPTEVLQI LQNHDRFTIT NKTPHKPASG AWFLFNRRVL  60
RYFRNDGYEW RKKKNGKTIA EAHERLKVDN VDALNCYYAH ADKNPTFQRR IYWILDPAYE  120
HIVFVHYRDV QEGSISVSAL NDSSTSNQNG SASRAEAQSS PGLTSELFAP CLNSCSPGSA  180
EEVSSQIMSI NNETNNGSQP DWVQHCNQAA LRKLKMQLSL EDKEDHVVDA EDIPSNSEPI  240
AVYGIQNEEP GTCRNLVDIF NVLEFTKDNH PEETGLHFSS TIDVLKNSDT WLEEDQIDAI  300
LQSASMTLSE NQWFNIREVS PEWSYCSEST KVIIAGDFLH DPPHGSCAIL FGDVKVPAEI  360
VQQGVIRCHT PCLDAGKVTM HLIDGNEKVC SEAREFEFHN KPTKSVVCES RKPCNEAQEF  420
EFHQEPIESN NELSLLVNYV QLLFDGHISE QFLKFGLPLT NLECRLQVSP SEIVKGTSEQ  480
LNRDTTINCL MEVLLNNKFE EWLSSKYKQN SEGVHFLPRQ YHGVIHTIAA LGYNWALELL  540
LNSGVLVNYR DANGWTALHW AARFGREETV VLLLAAGAAA GALSDPTAED PAAKTPASVA  600
SAYGFKGLSA FLSEAELTSH PYALESKENG VSGDGLSRVT DRISDASAHV EGGSDDQLAL  660
KDSLGAVRNA VQAAGRIQTA FRMFSFRKKQ QEALQNRDSH ILSTHEVGAA SRGMLEKAAL  720
SIQKNFRCWK KRKEFLKIRK NVIKIQARVR AHQQHNKYKD LLRSVGILEK VMLRWYRKGV  780
GLRGFNSGAM PIDEEEEDDI LKVFRKQRVE TALNEAVSRV SSIIDSPVAK QQYRRMLEMY  840
HQKKVQDGNE K
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G36780.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0689320.0AK068932.1 Oryza sativa Japonica Group cDNA clone:J023002D02, full insert sequence.
GenBankAK1221100.0AK122110.1 Oryza sativa Japonica Group cDNA clone:J033127H20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006645250.20.0PREDICTED: calmodulin-binding transcription activator 4-like isoform X1
TrEMBLA0A0D9V9P40.0A0A0D9V9P4_9ORYZ; Uncharacterized protein
STRINGLPERR01G36780.20.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09410.31e-143ethylene induced calmodulin binding protein