PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G35570.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family B3
Protein Properties Length: 594aa    MW: 66586.2 Da    PI: 4.9922
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G35570.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.81.1e-14511311097
                      HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
               B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                      ++++  + +p +fa+++   +  +  + led  g +W+v+l  + ++g   ++ GWk+Fv ++++  g+f+vF+l+ rs f  +v++f
  LPERR01G35570.1  51 YFSE-TMDIPLPFAKTITDLT--GSNVYLEDAFGLRWRVRL--CLCDGILSFGHGWKNFVLDHDISIGEFLVFRLIARSVF--TVQIF 131
                      4444.599*******995443..337***************..999999***************************99999..88887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.55E-2239136IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.2E-1940134IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.73141134IPR003340B3 DNA binding domain
CDDcd100172.94E-1742131No hitNo description
PfamPF023627.9E-1244131IPR003340B3 DNA binding domain
SMARTSM010192.1E-1444134IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.6E-12495592IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.71E-13496589IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.827497592IPR003340B3 DNA binding domain
CDDcd100173.09E-9498588No hitNo description
SMARTSM010190.017500592IPR003340B3 DNA binding domain
PfamPF023622.4E-7525586IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 594 aa     Download sequence    Send to blast
MVELITVLKI EQEENNADSH GEERADVHEE KTEKSRPMPT LPSFFKIMVG YFSETMDIPL  60
PFAKTITDLT GSNVYLEDAF GLRWRVRLCL CDGILSFGHG WKNFVLDHDI SIGEFLVFRL  120
IARSVFTVQI FAISACERMH HCERNKRQNK KRKPSKKIDY PANNQMVKVS NKDVDKRRKK  180
QRTEQGYDPS PSQPELPVHV CIDSGSDLRC YESSVKELLD VAAGESHEVV EVPTGAANDC  240
RTECNATVMT ADKESIRSHQ DRPMQLYCTL GLEDRNAATE ECEDSKMLDN AELRTPLATM  300
DLNEASIDDI FLSADIYEFD SDLCSPEAFS VYLNNEGLAK NGQSSVDCFG MPETSTCLEN  360
KQMSDVPITS ADADSVAVAV HGIDINVFPT LPSSVLSEIG QDNSSSYIDA DAYKKCKYVL  420
CLPSEGNQVS QKGNCSVKQD FLEDGPHQTA AQIMPGRPKT WELPDVRKDR SQSGNNCEAQ  480
ESRSTKSCVF LAAAANNKKF CITVPPPDQT WLELPRRLPV LPRTKKQARK ILILKDPSMR  540
LWPVLYQCTP KFNGFITGWA DISRENNLHQ GDTCEFELCS KTELSFQVVA PNSQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G35570.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0635301e-160AK063530.1 Oryza sativa Japonica Group cDNA clone:001-117-B02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006646580.10.0PREDICTED: B3 domain-containing protein Os01g0905400-like
SwissprotQ5N6V00.0Y1054_ORYSJ; B3 domain-containing protein Os01g0905400
TrEMBLA0A0D9V9900.0A0A0D9V990_9ORYZ; Uncharacterized protein
STRINGLPERR01G35570.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114613240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.11e-09B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]