PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR01G35510.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | ARR-B | ||||||||
Protein Properties | Length: 586aa MW: 65601.5 Da PI: 4.8463 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 71.7 | 1.1e-22 | 192 | 251 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsek......AtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r++W+ +LH++Fv+av+q+ G ++ Pk+il+lm+v+gLt+e+v+SHLQkYRl LPERR01G35510.2 192 KARVVWSVDLHQKFVNAVNQI-GFDRqlmlaeVGPKKILDLMNVPGLTRENVASHLQKYRL 251 68*******************.555423332257**************************8 PP | |||||||
2 | Response_reg | 80.5 | 5.5e-27 | 12 | 120 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 vl+vdD+p+ +++l+++l+k y ev+++ ++ al++l+e++ +D+++ D++mp+mdG++ll++i e +lp+i+++ ge + + + ++ LPERR01G35510.2 12 VLVVDDDPTWLKILEKMLRKCSY-EVTTCGLARVALDILRERKnkFDIVISDVNMPDMDGFKLLEHIGLEM-DLPVIMMSIDGETSRVMKGVQH 103 89*********************.***************877777**********************6654.8********************* PP TESEEEESS--HHHHHH CS Response_reg 93 GakdflsKpfdpeelvk 109 Ga d+l Kp+ ++el++ LPERR01G35510.2 104 GACDYLLKPVRMKELRN 120 **************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 7.6E-177 | 2 | 581 | IPR017053 | Response regulator B-type, plant |
Gene3D | G3DSA:3.40.50.2300 | 1.1E-43 | 9 | 146 | No hit | No description |
SuperFamily | SSF52172 | 6.55E-35 | 9 | 133 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 1.4E-31 | 10 | 122 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 42.718 | 11 | 126 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 3.6E-24 | 12 | 121 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 1.85E-28 | 13 | 125 | No hit | No description |
SuperFamily | SSF46689 | 1.61E-15 | 189 | 255 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.1E-26 | 191 | 256 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.0E-19 | 192 | 251 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.5E-7 | 194 | 250 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0010082 | Biological Process | regulation of root meristem growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 586 aa Download sequence Send to blast |
MDATAFPYGL RVLVVDDDPT WLKILEKMLR KCSYEVTTCG LARVALDILR ERKNKFDIVI 60 SDVNMPDMDG FKLLEHIGLE MDLPVIMMSI DGETSRVMKG VQHGACDYLL KPVRMKELRN 120 IWQHVYRKKM HEVKEIEGND SCDDLQILRN GFEGLDEKNL FMRSDSDMMR KRKDMDKDHA 180 DQESSDGTTV KKARVVWSVD LHQKFVNAVN QIGFDRQLML AEVGPKKILD LMNVPGLTRE 240 NVASHLQKYR LYLSRLQKQN EERILGAARQ DFSHKGTSEN LNLRSSFQEQ PNNIANGYPH 300 ASQNVQTQTN MLDSQLEDTK STVALSVLDK KRTIATDVAD SQNVTSASSL GGVLSFKSMP 360 VNQDRKPSET MILECQAWSG GIPSKQFMQY PKHNHERCDL LGDYSCLPKP DLEHPVGPSN 420 LYTPPPLISM SCSMEGDARD FSDVKPALMD CIKSLSPALT CTVDSVSVQL SDSVVTSTDG 480 DLKFSCVDGL PSIKDCSLDQ TNSQGTLRPS QEPSIIGGTE LASLPDDLPS YPLHGLSFEN 540 IGLSSIDLLH YSDAMILSGL QSNWYDDVEF SSDMMDYPSI DECLFA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 1e-16 | 188 | 256 | 1 | 63 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00010 | PBM | Transfer from AT1G67710 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR01G35510.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK062250 | 0.0 | AK062250.1 Oryza sativa Japonica Group cDNA clone:001-047-G01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015622017.1 | 0.0 | two-component response regulator ORR26 isoform X1 | ||||
Swissprot | Q5N6V8 | 0.0 | ORR26_ORYSJ; Two-component response regulator ORR26 | ||||
TrEMBL | A0A0D9V973 | 0.0 | A0A0D9V973_9ORYZ; Two-component response regulator | ||||
STRING | LPERR01G35510.2 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5900 | 37 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67710.1 | 1e-109 | response regulator 11 |
Publications ? help Back to Top | |||
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