PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G33180.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C3H
Protein Properties Length: 545aa    MW: 57368 Da    PI: 5.8601
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G33180.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.73.5e-07354376325
                      S---SGGGGTS--TTTTT-SS-S CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                      t+lCr+++ + +C+ G+rC+F+H
  LPERR01G33180.1 354 TRLCRYYFSGRHCSLGERCTFSH 376
                      9********************** PP
2zf-CCCH27.64.9e-09421447127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      ykt+lC+ ++ +G C +  +C+FaHg+
  LPERR01G33180.1 421 YKTKLCSEYMSGGLCLFSINCTFAHGQ 447
                      9************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.695351379IPR000571Zinc finger, CCCH-type
SMARTSM003560.11351378IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-6352382IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-5353376IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-5354377IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-12419452IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-8419452IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.192420448IPR000571Zinc finger, CCCH-type
SMARTSM003560.0032420447IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-6421447IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MDEHSADDHP LAEEDAGISD AFIQSDDHPL AEEDAGISDA FIQSDDHLLA EHSGIKDFVV  60
KAVDNLLAKD DSGKSDVVDQ HLPTGITDVV VQAVDQLADL NLSDDRALVT GDAAPVIPGA  120
AHLRYIDAAA RAHADDAVIT YPAPPYAITS SAFAEAGHVF PFLGAPYGPA FASTPPSAAN  180
HAWPVSTSSH DPFAAADAYF AQIGSVVAAS MESVTSSSTV SGFYTITNSP SSNSDMIPVS  240
YTTVLSTTSP SGVAPSTFPP VSALCYLPVP SFTTTRFHPV ATAFAYPDPR LATGFPSRYL  300
IPVAPPLSTG VLIPVAPPLS TGALIPVAPP LSTGDLIPLP PPREPLLSRG NENTRLCRYY  360
FSGRHCSLGE RCTFSHYYNQ TRLLPSRVSH VAESSTSTGL PLPPPSSSST ATAAGRHGVF  420
YKTKLCSEYM SGGLCLFSIN CTFAHGQAEL RPSCNYIRSG RTCPHGRGRG RGGDPRWRKH  480
GVILVPGREG EGERRETTAC ALLGSGQGFG LLGGFGRKDQ KSRGRLDKEE HKGNDGAGTG  540
ETDAL
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G33180.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D9V8A30.0A0A0D9V8A3_9ORYZ; Uncharacterized protein
STRINGLPERR01G33180.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP173811111