PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR01G33060.2

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

bZIP

Protein Properties

Length: 264aa MW: 27688.5 Da PI: 9.5497

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR01G33060.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	47.3	4.4e-15	182	234	3	55
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 + +r++r++kNRe+A rsR+RK+a+i+eLe v +Le+eN ++ ke ee ++ LPERR01G33060.2 182 AMQRQKRMIKNRESAARSRERKQAYIAELESLVMQLEEENAKMFKEQEEQHQK 234 689*************************************9998877665444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	8.2E-9	180	244	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	4.5E-14	182	241	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.783	182	246	IPR004827	Basic-leucine zipper domain
CDD	cd14707	6.26E-21	184	234	No hit	No description
SuperFamily	SSF57959	1.76E-10	184	233	No hit	No description
Gene3D	G3DSA:1.20.5.170	7.5E-13	185	242	No hit	No description
PROSITE pattern	PS00036	0	187	202	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MASSRVMASS SPSHTTSDLA RFAAGRGGST GLGSMNVEEI LRGIYADMPT PSLAPVVDGG 60 RPMSPPPAPG IAAAAAAPRT AEEVWKEITG GVGVAAAAPD VVAAGGGGGA GGGAGAAEMT 120 LEDFLAREGG AVKEDVVAGP SASAVEGQVV MGFLNGAEVA GGVTGGGRSR KRQLMDPMDR 180 AAMQRQKRMI KNRESAARSR ERKQAYIAEL ESLVMQLEEE NAKMFKEQEE QHQKRLKELK 240 EMITPVVVRK MPSRDLRRTN SMQW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the ABA-responsive elements (ABREs) in vitro. Involved in abiotic stress responses and abscisic acid (ABA) signaling (PubMed:20039193). Involved in the signaling pathway that induces growth inhibition in response to D-allose (PubMed:23397192). {ECO:0000269\|PubMed:20039193, ECO:0000269\|PubMed:23397192}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR01G33060.2

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by anoxia, drought, salt stress, oxidative stress, cold and abscisic acid (ABA) (PubMed:20039193). Induced by D-allose (PubMed:23397192). {ECO:0000269\|PubMed:20039193, ECO:0000269\|PubMed:23397192}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK067919	1e-140	AK067919.1 Oryza sativa Japonica Group cDNA clone:J013123H12, full insert sequence.
GenBank	GQ904238	1e-140	GQ904238.1 Oryza sativa Japonica Group ABA responsive element binding factor 1 mRNA, complete cds.
GenBank	OSU25283	1e-140	U25283.1 Oryza sativa clone OSE2 leucine zipper protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015612904.1	1e-113	bZIP transcription factor 12-like
Swissprot	Q0JHF1	1e-114	BZP12_ORYSJ; bZIP transcription factor 12
TrEMBL	A0A0D9V876	0.0	A0A0D9V876_9ORYZ; Uncharacterized protein
TrEMBL	A0A0D9V877	0.0	A0A0D9V877_9ORYZ; Uncharacterized protein
STRING	LPERR01G33060.1	0.0	(Leersia perrieri)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03970.1	3e-29	G-box binding factor 4

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]