PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR01G32960.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | Dof | ||||||||
Protein Properties | Length: 334aa MW: 35404.1 Da PI: 4.7632 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 120.4 | 6.4e-38 | 35 | 90 | 6 | 61 |
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +cprCds ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rkn++ LPERR01G32960.1 35 PNCPRCDSPNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRG 90 68***************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 6.0E-36 | 16 | 89 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 8.5E-32 | 35 | 89 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.854 | 35 | 89 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 37 | 73 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MLSSHHHEAM LPYAPRPPSL LVDRRYKQAG AEVAPNCPRC DSPNTKFCYY NNYSLSQPRY 60 FCKGCRRYWT KGGSLRNVPV GGGCRKNRRG KSSSSARSAS DRASDSVFGH RFTGPVRPDM 120 VLEGLVGNNP ANPGQVMPDV AGAAADGSTI DLAMLYAKFL NHPTPTDATG LGVGAVTPDS 180 AGGHVDDTFD TSFSASSDLS PGILAPARFD HPSQDGFGEW SSPASGNDPT STATTTNMLC 240 TDASVQAALG ELNFAMDQSC FDALGLPSTD GDGCAGSLSS WCSIVPSLST WEEPKYDSLD 300 SFPDDAMSLH EGLIGAPDHD WSVDCQGLEA LYMP |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00405 | DAP | Transfer from AT3G52440 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR01G32960.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003270 | 0.0 | AP003270.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0505D12. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015646108.1 | 0.0 | dof zinc finger protein 4-like | ||||
TrEMBL | A0A0D9V861 | 0.0 | A0A0D9V861_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR01G32960.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2659 | 36 | 83 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52440.1 | 4e-37 | Dof family protein |