PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G32960.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family Dof
Protein Properties Length: 334aa    MW: 35404.1 Da    PI: 4.7632
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G32960.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof120.46.4e-383590661
           zf-Dof  6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                      +cprCds ntkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rkn++ 
  LPERR01G32960.1 35 PNCPRCDSPNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRG 90
                     68***************************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074786.0E-361689IPR003851Zinc finger, Dof-type
PfamPF027018.5E-323589IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.8543589IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103773IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MLSSHHHEAM LPYAPRPPSL LVDRRYKQAG AEVAPNCPRC DSPNTKFCYY NNYSLSQPRY  60
FCKGCRRYWT KGGSLRNVPV GGGCRKNRRG KSSSSARSAS DRASDSVFGH RFTGPVRPDM  120
VLEGLVGNNP ANPGQVMPDV AGAAADGSTI DLAMLYAKFL NHPTPTDATG LGVGAVTPDS  180
AGGHVDDTFD TSFSASSDLS PGILAPARFD HPSQDGFGEW SSPASGNDPT STATTTNMLC  240
TDASVQAALG ELNFAMDQSC FDALGLPSTD GDGCAGSLSS WCSIVPSLST WEEPKYDSLD  300
SFPDDAMSLH EGLIGAPDHD WSVDCQGLEA LYMP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00405DAPTransfer from AT3G52440Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G32960.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032700.0AP003270.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0505D12.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015646108.10.0dof zinc finger protein 4-like
TrEMBLA0A0D9V8610.0A0A0D9V861_9ORYZ; Uncharacterized protein
STRINGLPERR01G32960.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26593683
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52440.14e-37Dof family protein