PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR01G32940.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

bHLH

Protein Properties

Length: 899aa MW: 96975.7 Da PI: 5.6026

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR01G32940.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.9	0.00043	702	739	13	55
HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R+ i +++ eLre++P++ K s + Lek+++++ Lq LPERR01G32940.1 702 RQMIQDRIKELREIVPNS-----AKCSIDALLEKTIKHMLFLQ 739 77899**********6.....5999999******99998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	3.0E-35	8	188	IPR025610	Transcription factor MYC/MYB N-terminal
CDD	cd00083	5.69E-4	683	740	No hit	No description
PROSITE profile	PS50888	10.499	689	738	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.7E-4	702	743	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 899 aa Download sequence Send to blast
MAAGASPLRD SLRRLCADVG WSYAVFWRAT RAADSQQLQL VWGDGHCEPE AGAPAISGFE 60 AMDLLLKEKA AALRSGAGRS GGGGGAAGHG QDRVEALVHK AMAQQVHVVG EGVIGQAALT 120 GLHRWILHDS LDECEEEDEV LLEMKDQFSA GMQTVAVIPV LPQGVIQLGS TKMVMEEAAF 180 IDHVRSLFQL LGSSTAIVPC GSFVQDSIMK TLLLKSLGVT TSSHSEDHPA GGKTYNDDMI 240 NHQFRNQMSP ASTIQSFNPV HQFYAGPTFC RPVTIASRCD LFQSDSGSTF TLNSQSEDNN 300 TSTVLPKNNV LNSQTSNDAF PHAFSPLNEP NITISGRREP VSIEQHASCR NGEIEITKGC 360 TASSSCAGDT NILNKVNASL SRDRLVDCQT SNATAVNRKF QTMSIVDNTK LQDGSCSPDA 420 AFVDSARYSN CFQPLLGTLH GSSSSNSNAV HVDTSHNGVP GVNDFCPLRD RNIANSSGLP 480 ELLMSPIPLE LTGGNDLFDV LQLQHKQNSS NDSEANNPVS VSYGSEQAVK SLIECVDDDF 540 AGLITEADPD QLLDAIASKI ITGQKQNVDT GASCSSSAAS IDKPLHSDCH PYTTGASSGQ 600 IFYNFTSVSP VTIKNKVTAE GFRQSSSSKD KSEGCSQTEQ SYKSQIRLWV ENNNSMGSDS 660 LSTGQASDSL SAGHCKRNDE IGKSNRKRSR PGESARPRPK DRQMIQDRIK ELREIVPNSA 720 KCSIDALLEK TIKHMLFLQN VAKHADKLKE SGEPKIVSQE EGLLLKDNFE GGATWAFEVG 780 TRSMTCPIIV EDLSPPRQML VEMLCKERGI FLEIADQIRG LGLTILKGVM EVRKDKIWAR 840 FAVEANKDVT RMEIFLSLVH LLEPSTGSSI LSAGVENISL PRNSFFPSSI PATGFSNSL

Sequence ? help Back to Top

Protein Sequence Length: 899 aa Download sequence Send to blast

MAAGASPLRD SLRRLCADVG WSYAVFWRAT RAADSQQLQL VWGDGHCEPE AGAPAISGFE  60
AMDLLLKEKA AALRSGAGRS GGGGGAAGHG QDRVEALVHK AMAQQVHVVG EGVIGQAALT  120
GLHRWILHDS LDECEEEDEV LLEMKDQFSA GMQTVAVIPV LPQGVIQLGS TKMVMEEAAF  180
IDHVRSLFQL LGSSTAIVPC GSFVQDSIMK TLLLKSLGVT TSSHSEDHPA GGKTYNDDMI  240
NHQFRNQMSP ASTIQSFNPV HQFYAGPTFC RPVTIASRCD LFQSDSGSTF TLNSQSEDNN  300
TSTVLPKNNV LNSQTSNDAF PHAFSPLNEP NITISGRREP VSIEQHASCR NGEIEITKGC  360
TASSSCAGDT NILNKVNASL SRDRLVDCQT SNATAVNRKF QTMSIVDNTK LQDGSCSPDA  420
AFVDSARYSN CFQPLLGTLH GSSSSNSNAV HVDTSHNGVP GVNDFCPLRD RNIANSSGLP  480
ELLMSPIPLE LTGGNDLFDV LQLQHKQNSS NDSEANNPVS VSYGSEQAVK SLIECVDDDF  540
AGLITEADPD QLLDAIASKI ITGQKQNVDT GASCSSSAAS IDKPLHSDCH PYTTGASSGQ  600
IFYNFTSVSP VTIKNKVTAE GFRQSSSSKD KSEGCSQTEQ SYKSQIRLWV ENNNSMGSDS  660
LSTGQASDSL SAGHCKRNDE IGKSNRKRSR PGESARPRPK DRQMIQDRIK ELREIVPNSA  720
KCSIDALLEK TIKHMLFLQN VAKHADKLKE SGEPKIVSQE EGLLLKDNFE GGATWAFEVG  780
TRSMTCPIIV EDLSPPRQML VEMLCKERGI FLEIADQIRG LGLTILKGVM EVRKDKIWAR  840
FAVEANKDVT RMEIFLSLVH LLEPSTGSSI LSAGVENISL PRNSFFPSSI PATGFSNSL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR01G32940.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK068033	0.0	AK068033.1 Oryza sativa Japonica Group cDNA clone:J013129B18, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015619837.1	0.0	transcription factor LHW isoform X4
TrEMBL	A0A0D9V858	0.0	A0A0D9V858_9ORYZ; Uncharacterized protein
STRING	LPERR01G32940.2	0.0	(Leersia perrieri)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31280.1	1e-54	conserved peptide upstream open reading frame 7