PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR01G32790.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | NAC | ||||||||
Protein Properties | Length: 256aa MW: 28374.4 Da PI: 5.0153 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 143.3 | 1.4e-44 | 9 | 141 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.......kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 +pGfrF Pt+eel+++yL++k+++ + ++e+vi+ +d+y+v+Pw+L + +ee+ w++F++r++k+a+g r++r+t sgyWka g+ LPERR01G32790.1 9 APGFRFYPTEEELICFYLRNKLDSLRDDIERVIPVFDVYSVDPWQLSEihgilcaGGGEEEEPWFYFCPRQEKEARGGRPSRTTPSGYWKAAGT 102 59***************************99***************855677743223366699****************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +v+s +++ +g+kkt+vfy+grap+g+kt+W m+eyr+ LPERR01G32790.1 103 PGAVYS-DRRPIGMKKTMVFYRGRAPSGTKTNWKMNEYRA 141 ******.999****************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.02E-49 | 6 | 182 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 46.189 | 8 | 182 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.4E-24 | 10 | 140 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MADGGHHRAP GFRFYPTEEE LICFYLRNKL DSLRDDIERV IPVFDVYSVD PWQLSEIHGI 60 LCAGGGEEEE PWFYFCPRQE KEARGGRPSR TTPSGYWKAA GTPGAVYSDR RPIGMKKTMV 120 FYRGRAPSGT KTNWKMNEYR AFHYADAAST GAGASSSSGA AAQPSLPPQL RSEFSLCRLY 180 TKSGCQRQFD RRPLAGCHDE NPGPSTAAAA VSPEENDGSD NSMQQQQQEL IDQGGAIDPD 240 WDDVATLTAF LYWPGD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-30 | 10 | 143 | 19 | 144 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-30 | 10 | 143 | 19 | 144 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-30 | 10 | 143 | 19 | 144 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-30 | 10 | 143 | 19 | 144 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-30 | 10 | 143 | 22 | 147 | NAC domain-containing protein 19 |
3swm_B | 2e-30 | 10 | 143 | 22 | 147 | NAC domain-containing protein 19 |
3swm_C | 2e-30 | 10 | 143 | 22 | 147 | NAC domain-containing protein 19 |
3swm_D | 2e-30 | 10 | 143 | 22 | 147 | NAC domain-containing protein 19 |
3swp_A | 2e-30 | 10 | 143 | 22 | 147 | NAC domain-containing protein 19 |
3swp_B | 2e-30 | 10 | 143 | 22 | 147 | NAC domain-containing protein 19 |
3swp_C | 2e-30 | 10 | 143 | 22 | 147 | NAC domain-containing protein 19 |
3swp_D | 2e-30 | 10 | 143 | 22 | 147 | NAC domain-containing protein 19 |
4dul_A | 1e-30 | 10 | 143 | 19 | 144 | NAC domain-containing protein 19 |
4dul_B | 1e-30 | 10 | 143 | 19 | 144 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR01G32790.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015632691.1 | 1e-133 | NAC domain-containing protein 90 isoform X2 | ||||
Swissprot | Q9FMR3 | 6e-66 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A0D9V840 | 0.0 | A0A0D9V840_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR01G32790.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1005 | 38 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 9e-67 | NAC domain containing protein 90 |
Publications ? help Back to Top | |||
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