PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G32640.6
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bZIP
Protein Properties Length: 416aa    MW: 46393 Da    PI: 6.5869
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G32640.6genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.68.8e-11104134434
                      XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeek 34 
                       k err+++NReAAr+sR+RKka++++Le+ 
  LPERR01G32640.6 104 AKTERRLAQNREAARKSRLRKKAYVQNLETS 134
                      799*************************974 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.4E-6101167IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.278103147IPR004827Basic-leucine zipper domain
PfamPF001706.4E-8104135IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.63E-7105148No hitNo description
Gene3DG3DSA:1.20.5.1701.1E-7105149No hitNo description
PROSITE patternPS000360108123IPR004827Basic-leucine zipper domain
PfamPF141448.4E-30186260IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MAEQGNSQSV GSTTDSSSAQ NTMPQMELVS PASIRASSEQ QQQPQPGQEV MMVTTDDYSY  60
KPGLAAASPS FQQHQLQQQP LHGGGDHDKR KLGSTRKEGK LVDAKTERRL AQNREAARKS  120
RLRKKAYVQN LETSRVRLQQ IEQELQRARS QGLLLGGCSA AGDTSSGAAV FDMEYARWLD  180
DDSKRLTELR GGLQAHLLDT NLGLIVEECM QHYDELFQLK ASLARSDVFH LLTGTWATPA  240
ERCFLWMGGF RPSDLLKILI QQLDPLTEQQ MLGIYNLQQS SEQAEEALGQ GLQQLHQSLA  300
DTVAAGTLNN DGPGVPNYMS LMAIALDKLA NLESFYQQAD NLRQQTLHQL HRILTTRQAA  360
RCFLSIGEYY RRLRALSNLW SSRPCESFIG TESVSPPGTE LQTMHHQPQQ NQYSGF
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response (By similarity). Acts as transcriptional activator in vitro (PubMed:22353606). {ECO:0000250|UniProtKB:Q7X993, ECO:0000269|PubMed:22353606}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00131DAPTransfer from AT1G08320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G32640.6
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1013380.0AK101338.1 Oryza sativa Japonica Group cDNA clone:J033034J12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006645055.10.0PREDICTED: transcription factor TGA2-like isoform X2
RefseqXP_015616943.10.0transcription factor LG2 isoform X2
SwissprotQ5N7C70.0LG2_ORYSJ; Transcription factor LG2
TrEMBLA0A0D9V8210.0A0A0D9V821_9ORYZ; Uncharacterized protein
STRINGLPERR01G32640.10.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.21e-135bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    A rice transient assay system identifies a novel domain in NRR required for interaction with NH1/OsNPR1 and inhibition of NH1-mediated transcriptional activation.
    Plant Methods, 2012. 8(1): p. 6
    [PMID:22353606]
  3. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]