PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR01G32640.3

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

bZIP

Protein Properties

Length: 481aa MW: 52928.5 Da PI: 6.753

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR01G32640.3	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.3	1.1e-10	161	191	4	34
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeek 34 k err+++NReAAr+sR+RKka++++Le+ LPERR01G32640.3 161 AKTERRLAQNREAARKSRLRKKAYVQNLETS 191 799*************************974 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.4E-6	158	224	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.278	160	204	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	7.8E-8	161	192	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.3E-7	162	206	No hit	No description
SuperFamily	SSF57959	6.91E-7	162	205	No hit	No description
PROSITE pattern	PS00036	0	165	180	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.1E-29	243	317	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 481 aa Download sequence Send to blast
MVQGEESSWR MAASTHHERA IPLNQALAYG VQAHASASVA ATPPASFLDF QPAAAAAAYF 60 GELEEALIHG AANAAGVVDP GMIRGGDVHT KSAATAGYLA ARPPTLEIFP SWPTRQQQQL 120 HSGNSQSVGS TTDSSSAQNT MPQMELRKLG STRKEGKLVD AKTERRLAQN REAARKSRLR 180 KKAYVQNLET SRVRLQQIEQ ELQRARSQGL LLGGCSAAGD TSSGAAVFDM EYARWLDDDS 240 KRLTELRGGL QAHLLDTNLG LIVEECMQHY DELFQLKASL ARSDVFHLLT GTWATPAERC 300 FLWMGGFRPS DLLKILIQQL DPLTEQQMLG IYNLQQSSEQ AEEALGQGLQ QLHQSLADTV 360 AAGTLNNDGP GVPNYMSLMA IALDKLANLE SFYQQVTNLV NVQADNLRQQ TLHQLHRILT 420 TRQAARCFLS IGEYYRRLRA LSNLWSSRPC ESFIGTESVS PPGTELQTMH HQPQQNQYSG 480 F

Sequence ? help Back to Top

Protein Sequence Length: 481 aa Download sequence Send to blast

MVQGEESSWR MAASTHHERA IPLNQALAYG VQAHASASVA ATPPASFLDF QPAAAAAAYF  60
GELEEALIHG AANAAGVVDP GMIRGGDVHT KSAATAGYLA ARPPTLEIFP SWPTRQQQQL  120
HSGNSQSVGS TTDSSSAQNT MPQMELRKLG STRKEGKLVD AKTERRLAQN REAARKSRLR  180
KKAYVQNLET SRVRLQQIEQ ELQRARSQGL LLGGCSAAGD TSSGAAVFDM EYARWLDDDS  240
KRLTELRGGL QAHLLDTNLG LIVEECMQHY DELFQLKASL ARSDVFHLLT GTWATPAERC  300
FLWMGGFRPS DLLKILIQQL DPLTEQQMLG IYNLQQSSEQ AEEALGQGLQ QLHQSLADTV  360
AAGTLNNDGP GVPNYMSLMA IALDKLANLE SFYQQVTNLV NVQADNLRQQ TLHQLHRILT  420
TRQAARCFLS IGEYYRRLRA LSNLWSSRPC ESFIGTESVS PPGTELQTMH HQPQQNQYSG  480
F

Functional Description ? help Back to Top
Source	Description
UniProt	Required for the formation of the blade-sheath boundary in leaves. Promotes flowering. {ECO:0000269\|PubMed:9490265}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00131	DAP	Transfer from AT1G08320	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR01G32640.3

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK101338	0.0	AK101338.1 Oryza sativa Japonica Group cDNA clone:J033034J12, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006645055.1	0.0	PREDICTED: transcription factor TGA2-like isoform X2
Swissprot	O49067	0.0	LG2_MAIZE; Transcription factor LG2
TrEMBL	A0A0D9V818	0.0	A0A0D9V818_9ORYZ; Uncharacterized protein
STRING	LPERR01G32640.1	0.0	(Leersia perrieri)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.2	1e-130	bZIP family protein

Publications ? help Back to Top
Walsh J,Freeling M The liguleless2 gene of maize functions during the transition from the vegetative to the reproductive shoot apex. Plant J., 1999. 19(4): p. 489-95 [PMID:10504571] Schnable PS, et al. The B73 maize genome: complexity, diversity, and dynamics. Science, 2009. 326(5956): p. 1112-5 [PMID:19965430]