PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR01G32640.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

bZIP

Protein Properties

Length: 542aa MW: 59529.7 Da PI: 6.5601

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR01G32640.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.4	9.9e-11	222	252	4	34
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeek 34 k err+++NReAAr+sR+RKka++++Le+ LPERR01G32640.1 222 AKTERRLAQNREAARKSRLRKKAYVQNLETS 252 799*************************974 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.4E-6	219	285	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.278	221	265	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	9.0E-8	222	253	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	8.04E-7	223	266	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.5E-7	223	267	No hit	No description
CDD	cd14708	3.95E-20	223	275	No hit	No description
PROSITE pattern	PS00036	0	226	241	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.3E-29	304	378	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 542 aa Download sequence Send to blast
MVQGEESSWR MAASTHHERA IPLNQALAYG VQAHASASVA ATPPASFLDF QPAAAAAAYF 60 GELEEALIHG AANAAGVVDP GMIRGGDVHT KSAATAGYLA ARPPTLEIFP SWPTRQQQQL 120 HSGNSQSVGS TTDSSSAQNT MPQMELVSPA SIRASSEQQQ QPQPGQEVMM VTTDDYSYKP 180 GLAAASPSFQ QHQLQQQPLH GGGDHDKRKL GSTRKEGKLV DAKTERRLAQ NREAARKSRL 240 RKKAYVQNLE TSRVRLQQIE QELQRARSQG LLLGGCSAAG DTSSGAAVFD MEYARWLDDD 300 SKRLTELRGG LQAHLLDTNL GLIVEECMQH YDELFQLKAS LARSDVFHLL TGTWATPAER 360 CFLWMGGFRP SDLLKILIQQ LDPLTEQQML GIYNLQQSSE QAEEALGQGL QQLHQSLADT 420 VAAGTLNNDG PGVPNYMSLM AIALDKLANL ESFYQQVTNL VNVQADNLRQ QTLHQLHRIL 480 TTRQAARCFL SIGEYYRRLR ALSNLWSSRP CESFIGTESV SPPGTELQTM HHQPQQNQYS 540 GF

Sequence ? help Back to Top

Protein Sequence Length: 542 aa Download sequence Send to blast

MVQGEESSWR MAASTHHERA IPLNQALAYG VQAHASASVA ATPPASFLDF QPAAAAAAYF  60
GELEEALIHG AANAAGVVDP GMIRGGDVHT KSAATAGYLA ARPPTLEIFP SWPTRQQQQL  120
HSGNSQSVGS TTDSSSAQNT MPQMELVSPA SIRASSEQQQ QPQPGQEVMM VTTDDYSYKP  180
GLAAASPSFQ QHQLQQQPLH GGGDHDKRKL GSTRKEGKLV DAKTERRLAQ NREAARKSRL  240
RKKAYVQNLE TSRVRLQQIE QELQRARSQG LLLGGCSAAG DTSSGAAVFD MEYARWLDDD  300
SKRLTELRGG LQAHLLDTNL GLIVEECMQH YDELFQLKAS LARSDVFHLL TGTWATPAER  360
CFLWMGGFRP SDLLKILIQQ LDPLTEQQML GIYNLQQSSE QAEEALGQGL QQLHQSLADT  420
VAAGTLNNDG PGVPNYMSLM AIALDKLANL ESFYQQVTNL VNVQADNLRQ QTLHQLHRIL  480
TTRQAARCFL SIGEYYRRLR ALSNLWSSRP CESFIGTESV SPPGTELQTM HHQPQQNQYS  540
GF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response (By similarity). Acts as transcriptional activator in vitro (PubMed:22353606). {ECO:0000250\|UniProtKB:Q7X993, ECO:0000269\|PubMed:22353606}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00131	DAP	Transfer from AT1G08320	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR01G32640.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK101338	0.0	AK101338.1 Oryza sativa Japonica Group cDNA clone:J033034J12, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006645055.1	0.0	PREDICTED: transcription factor TGA2-like isoform X2
Swissprot	Q5N7C7	0.0	LG2_ORYSJ; Transcription factor LG2
TrEMBL	A0A0D9V816	0.0	A0A0D9V816_9ORYZ; Uncharacterized protein
STRING	LPERR01G32640.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3809	31	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.2	1e-130	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chern M, et al. A rice transient assay system identifies a novel domain in NRR required for interaction with NH1/OsNPR1 and inhibition of NH1-mediated transcriptional activation. Plant Methods, 2012. 8(1): p. 6 [PMID:22353606] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]