PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR01G32380.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | MYB | ||||||||
Protein Properties | Length: 445aa MW: 48650.4 Da PI: 6.7561 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.3 | 5.4e-16 | 110 | 156 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT +Ede l++ v ++G + W++Ia+ ++ R +kqc++rw ++l LPERR01G32380.1 110 KGAWTRQEDEVLKQMVILHGDRKWAAIAKSLP-DRIGKQCRERWTNHL 156 79******************************.************996 PP | |||||||
2 | Myb_DNA-binding | 54.8 | 2.2e-17 | 162 | 204 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++ WT+e+d l++a+k +G++ W++Iar+++ gR+++ +k++w+ LPERR01G32380.1 162 KDVWTEEDDRVLIEAHKAYGNR-WSAIARCIP-GRSENAVKNHWN 204 578*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.016 | 105 | 160 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.31E-29 | 108 | 203 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-15 | 109 | 158 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.1E-15 | 110 | 156 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.4E-24 | 111 | 162 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.60E-14 | 112 | 156 | No hit | No description |
PROSITE profile | PS51294 | 18.449 | 161 | 211 | IPR017930 | Myb domain |
SMART | SM00717 | 4.4E-17 | 161 | 209 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.4E-15 | 162 | 204 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-20 | 163 | 208 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 7.02E-14 | 165 | 207 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 445 aa Download sequence Send to blast |
MAAAGNSFLH QDPAMIGGRM PDRYFASSSH GTGAHYQSTG GAPITVAAPD MGFLVAGIGM 60 TPSRLVMPEG ALAAGYGAMP TISVGVAMQQ QQQQQQSRVG GNNRNPGPFK GAWTRQEDEV 120 LKQMVILHGD RKWAAIAKSL PDRIGKQCRE RWTNHLRPDI KKDVWTEEDD RVLIEAHKAY 180 GNRWSAIARC IPGRSENAVK NHWNATKRSL KSKRKMKKRS EQLMPRQLSQ LEEYIRTQCP 240 TASEETTPSP PVSAPPSEDV VMYDAGSVNT GPIAAVQEPT DSNDVGLANP PEIGIYLGLA 300 NPAGSPQQIG AMNLNMSLAP DHNAYDEQRN EYYQLPFVHQ GNLHYGQHEQ AQPVQQQGIS 360 VDQDFQPSYL SLYHPSYPGS HVGRVEFHFQ STNLQANVGG YYSEAGPSST AGAGAGDPED 420 VIQMASRQFL MPSEAEVTLD LTKFK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-40 | 106 | 206 | 3 | 103 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR01G32380.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015645142.1 | 0.0 | transcription factor MYB73 | ||||
TrEMBL | A0A0D9V7Y1 | 0.0 | A0A0D9V7Y1_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR01G32380.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1882 | 33 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27785.1 | 5e-43 | myb domain protein 118 |