PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR01G32290.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | MYB | ||||||||
Protein Properties | Length: 303aa MW: 33064.2 Da PI: 7.5788 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.6 | 1.6e-09 | 35 | 81 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 WT+eE + + +a +q + +W+++a++++ ++t +++++++++ LPERR01G32290.1 35 VWTAEENKVFEKALAQVDRDapnRWELVASMLP-RKTVIDVVNHYRDL 81 7*****************99*************.***********986 PP | |||||||
2 | Myb_DNA-binding | 44.3 | 4.1e-14 | 143 | 187 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++ ++ + k++G g+W+ I+r++ + Rt+ q+ s+ qky LPERR01G32290.1 143 PWTEEEHKSFLMGLKKYGRGDWRNISRYFVTSRTPTQVASHAQKY 187 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 8.358 | 31 | 85 | IPR017884 | SANT domain |
SMART | SM00717 | 1.6E-8 | 32 | 84 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 6.9E-11 | 34 | 89 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.0E-6 | 35 | 81 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.36E-7 | 36 | 81 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-4 | 36 | 79 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.657 | 136 | 192 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.17E-17 | 138 | 192 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 7.8E-17 | 139 | 190 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 1.3E-11 | 140 | 186 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.6E-12 | 140 | 190 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.47E-10 | 143 | 188 | No hit | No description |
Pfam | PF00249 | 1.6E-11 | 143 | 187 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MMAEAFREVL PLPYFAGQPC WYFQERRGGA GAGDVWTAEE NKVFEKALAQ VDRDAPNRWE 60 LVASMLPRKT VIDVVNHYRD LENDVGSIEA GLVPFPHYSS LSPASAFTLQ DWDASDGAFR 120 RGGGGCCLKR GRAPDQERKK GVPWTEEEHK SFLMGLKKYG RGDWRNISRY FVTSRTPTQV 180 ASHAQKYFIR LSSGGKDKRR SSIHDITTVN LPEDDAGNNP SPSPPSALTT ASDQLGAVVD 240 AKPPPPPSSI AVQRHFMSPL PGALGVSHPY GNVKIEPNAS FLAGGTGPGL DDAILLQMQC 300 GQL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 5e-14 | 31 | 100 | 6 | 75 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR01G32290.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ940214 | 0.0 | FJ940214.1 Oryza sativa Japonica Group clone KCS611H03 Myb transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006646487.1 | 0.0 | PREDICTED: transcription factor DIVARICATA-like | ||||
Swissprot | Q8S9H7 | 9e-77 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A0D9V7X1 | 0.0 | A0A0D9V7X1_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR01G32290.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2274 | 37 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38090.1 | 1e-78 | MYB family protein |
Publications ? help Back to Top | |||
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