PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G31990.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family TALE
Protein Properties Length: 598aa    MW: 64231.6 Da    PI: 8.1304
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G31990.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.75.4e-103804171954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe   ++yp+  +++ LAk++gLt +qV++WF N R +
  LPERR01G31990.1 380 FEHflHPYPTDGDKQMLAKQTGLTRNQVSNWFINARVR 417
                      554459******************************88 PP
2BELL97.11.5e-31244313372
             BELL   3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      +e q kk+kL+s++eeV+krY+qy++q+q+v++sFe+vag  +a+p+++lAl+a+++hF+cLk +i +q+
  LPERR01G31990.1 244 AEQQWKKTKLISMMEEVCKRYRQYYQQVQAVMASFETVAGFSNAAPFAALALRAMAKHFKCLKGMILNQL 313
                      5899**************************************************************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.3E-36177311IPR006563POX domain
PfamPF075263.2E-36182309IPR006563POX domain
PROSITE profilePS5007112.228358421IPR001356Homeobox domain
SMARTSM003897.4E-11361425IPR001356Homeobox domain
CDDcd000862.37E-13361422No hitNo description
SuperFamilySSF466894.71E-17363429IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-28364425IPR009057Homeodomain-like
PfamPF059206.3E-19378417IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010089Biological Processxylem development
GO:0010154Biological Processfruit development
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048457Biological Processfloral whorl morphogenesis
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 598 aa     Download sequence    Send to blast
MSSSAAGGGY GGGGQGGGAE HHHHHQHLLL HHPQHVAGAA VAAAAAAGAG QMYHVPQHSR  60
REKLRFPPED LSPPPQQQQH GSSWPPPAAF YSYASSSSSY SPHSPTLAQA HQLVAHGLAP  120
PPPPTLPQIP TQNFSLSLSS ASSNPPPPQQ QQQPRRQHQL SGGLAQAAIT GPFGPFTGYA  180
AVLGRSRFLG PAEKLFEEIC DVGGASAHVD RTISDEGLLD ADPMEGIDHD HDRAGEDSGP  240
ISGAEQQWKK TKLISMMEEV CKRYRQYYQQ VQAVMASFET VAGFSNAAPF AALALRAMAK  300
HFKCLKGMIL NQLRNTSSKV AVKDGLSKDI AVFGLGGGRG AVAGLQPGNS GSAFGQPHNI  360
WRPQRGLPER AVSVLRAWLF EHFLHPYPTD GDKQMLAKQT GLTRNQVSNW FINARVRLWK  420
PMVEEIHNLE MRQVHKHSAV DKGQHSLHHQ AQHSSQCSGK PSDPSDSHPG QSSSITRNHN  480
TTASQGFPDE LSQMSQSIQG QMNFAYNGLS SQHNIASPHQ HQQVGVGGGN SGVSLTLGLH  540
QNNRVCIADP LPASLPSNLA HRFGLEEVSE AYVMSSFGGQ DRHFGKEIGG HLLHDFVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-16367425563Homeobox protein Meis2
3k2a_B2e-16367425563Homeobox protein Meis2
4xrs_A1e-16367424158Homeobox protein Meis1
4xrs_B1e-16367424158Homeobox protein Meis1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G31990.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0713300.0AB071330.1 Oryza sativa Indica Group qSH-1 mRNA for qSH-1, complete cds.
GenBankAB0713310.0AB071331.1 Oryza sativa Japonica Group qSH-1 mRNA for qSH-1, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015688150.10.0PREDICTED: BEL1-like homeodomain protein 9, partial
TrEMBLA0A0D9V7S80.0A0A0D9V7S8_9ORYZ; Uncharacterized protein
STRINGLPERR01G31990.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25283881
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.11e-60BEL1-like homeodomain 8