PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LPERR01G31830.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 189aa MW: 19936.8 Da PI: 8.3473 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 92.1 | 4.8e-29 | 87 | 139 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +r++WtpeLH+rFveav++L G++ A+Pk+i++lm+v+gLt+e+v+SHLQkYRl LPERR01G31830.1 87 ARMVWTPELHHRFVEAVAHL-GEKGAVPKAIVRLMNVDGLTRENVASHLQKYRL 139 69******************.9*******************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.582 | 83 | 142 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-28 | 87 | 143 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.09E-19 | 87 | 143 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.0E-24 | 88 | 139 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.2E-10 | 88 | 138 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 189 aa Download sequence Send to blast |
MLSARGGRPH DADAPPSSSS SSSSPRPRCM VDAAAAGDSS DRVMEWETGL PSPCEMTPVS 60 HQLVPPALAA AFGIGALEAG VLLPSFARMV WTPELHHRFV EAVAHLGEKG AVPKAIVRLM 120 NVDGLTRENV ASHLQKYRLY LKRTRAATPP PPPAMYLPCF AAKPPPDGAN CGESPPSRAP 180 DAKTTTQIG |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 2e-26 | 88 | 142 | 3 | 57 | Transcription factor LUX |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LPERR01G31830.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK066659 | 4e-81 | AK066659.1 Oryza sativa Japonica Group cDNA clone:J013068K17, full insert sequence. | |||
GenBank | AP003251 | 4e-81 | AP003251.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0446B05. | |||
GenBank | AP014957 | 4e-81 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012609 | 4e-81 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025878116.1 | 6e-77 | transcription factor PCL1-like | ||||
TrEMBL | A0A0D9V7Q7 | 1e-134 | A0A0D9V7Q7_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR01G31830.1 | 1e-135 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1620 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G05090.1 | 4e-28 | G2-like family protein |