PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR01G31730.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | WRKY | ||||||||
Protein Properties | Length: 318aa MW: 33828.5 Da PI: 6.9293 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 101.4 | 5.3e-32 | 134 | 190 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 Dgy+WrKYGqK++k++++prsYY+Cts++C++kk+ve+s++dp+++++tYeg+H+h LPERR01G31730.1 134 ADGYKWRKYGQKSIKNNPHPRSYYKCTSSRCSAKKHVEKSTDDPDMFIVTYEGSHHH 190 6*******************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.8E-31 | 130 | 191 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.05E-26 | 131 | 192 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.1E-35 | 133 | 192 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.9E-26 | 135 | 190 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.311 | 135 | 193 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MGDARRPQAN ATTDEMGVVW PGGLDDQLIS ELLGDDGLVV PTAGPSAPAA SPCNRGGSST 60 AATAWPSPAP AVIRALCSVY SGPTIRDIEK ALSSTSSSLS SRPFPSSRRY SSLVVGVENK 120 HTSNVRSCGG KMPADGYKWR KYGQKSIKNN PHPRSYYKCT SSRCSAKKHV EKSTDDPDMF 180 IVTYEGSHHH GPQPLLIPRI AHPPPMNDLV GAGAEPSSSP AAARKRKNED MALSFSPTSE 240 YDEGGLRRDD DAEAQRRGAA ENAAPRFVGA TEHSCDDGST SVSSVARADA ATTVLSSDSP 300 PTIWSCLDWP WSQEALFL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-20 | 135 | 190 | 19 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 2e-20 | 135 | 190 | 19 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR01G31730.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP101616 | 2e-81 | FP101616.1 Phyllostachys edulis cDNA clone: bphyem119j23, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015635485.1 | 1e-110 | WRKY transcription factor WRKY28 | ||||
TrEMBL | A0A0D9V7P2 | 0.0 | A0A0D9V7P2_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR01G31730.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13144 | 26 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43290.1 | 3e-27 | WRKY DNA-binding protein 49 |