PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR01G31650.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | MYB | ||||||||
Protein Properties | Length: 961aa MW: 104448 Da PI: 9.2577 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56 | 9.4e-18 | 64 | 110 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEde l +av+ + g++Wk+Ia++++ Rt+ qc +rwqk+l LPERR01G31650.1 64 KGGWTPEEDETLRKAVEAYKGRSWKKIAECFP-YRTEVQCLHRWQKVL 110 688*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 60.6 | 3.4e-19 | 116 | 162 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++++++vk++G+ W+ Ia+ ++ gR +kqc++rw+++l LPERR01G31650.1 116 KGPWTQEEDDQIIELVKKYGPTKWSVIAKALP-GRIGKQCRERWHNHL 162 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 56.6 | 5.8e-18 | 168 | 211 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++WT+eE++ l++a++ +G++ W+ Ia+ ++ gRt++++k++w++ LPERR01G31650.1 168 KDAWTAEEELALINAHQVYGNK-WAEIAKVLP-GRTDNSIKNHWNS 211 679*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.614 | 59 | 110 | IPR017930 | Myb domain |
SMART | SM00717 | 4.6E-16 | 63 | 112 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.8E-16 | 64 | 110 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.58E-15 | 65 | 120 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.5E-23 | 66 | 126 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.38E-14 | 67 | 110 | No hit | No description |
PROSITE profile | PS51294 | 32.103 | 111 | 166 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.41E-32 | 113 | 209 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.2E-19 | 115 | 164 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-18 | 116 | 162 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.68E-16 | 118 | 162 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-26 | 127 | 170 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.9E-17 | 167 | 215 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 22.905 | 167 | 217 | IPR017930 | Myb domain |
Pfam | PF00249 | 3.9E-16 | 168 | 211 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.15E-13 | 170 | 213 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.8E-23 | 171 | 217 | IPR009057 | Homeodomain-like |
SuperFamily | SSF51351 | 2.49E-91 | 706 | 953 | IPR000652 | Triosephosphate isomerase |
Hamap | MF_00147_B | 35.767 | 710 | 956 | IPR022896 | Triosephosphate isomerase, bacterial/eukaryotic |
Gene3D | G3DSA:3.20.20.70 | 9.2E-103 | 710 | 955 | IPR013785 | Aldolase-type TIM barrel |
PROSITE profile | PS51440 | 81.338 | 711 | 954 | IPR000652 | Triosephosphate isomerase |
CDD | cd00311 | 4.12E-113 | 712 | 953 | IPR000652 | Triosephosphate isomerase |
Pfam | PF00121 | 1.6E-85 | 713 | 952 | IPR000652 | Triosephosphate isomerase |
TIGRFAMs | TIGR00419 | 6.0E-89 | 713 | 947 | IPR000652 | Triosephosphate isomerase |
PROSITE pattern | PS00171 | 0 | 871 | 881 | IPR020861 | Triosephosphate isomerase, active site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006096 | Biological Process | glycolytic process | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0004807 | Molecular Function | triose-phosphate isomerase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 961 aa Download sequence Send to blast |
MGAMAMVEQE GCVENRQPLA ASSSSVSEGS SYGGGIAQMS PPVSSSANSI SGLRRTSGPI 60 RRAKGGWTPE EDETLRKAVE AYKGRSWKKI AECFPYRTEV QCLHRWQKVL NPELIKGPWT 120 QEEDDQIIEL VKKYGPTKWS VIAKALPGRI GKQCRERWHN HLNPEIRKDA WTAEEELALI 180 NAHQVYGNKW AEIAKVLPGR TDNSIKNHWN SSLRKKLDIY SSTMSVQKSL VHDKFKDKPK 240 AVATEGHLDL NKAPIISSKD QPGTAHRSNS SGLRSVSTLP TAQPLTSHEA SIVDDSAVTL 300 VAQALGSSSV HDKGLQINST PDPMGNSGII QLEGTPAKGE PELSLKNEAR STLGPLCYQI 360 PNMEDVAPVN SSLFSERPSA NHPPEHCEDG ISSPIGCITP PPTKEKISSQ LSVDSILRSA 420 ANSFRDTPSI LRRRKRDKST PVSASELKTS GANTDSFYTP TGMGLATPTP ESFKTSSFLS 480 LGSLDGLPTS VRSFDVSPQY QARSKRMAVT KTVEKQLDFS SDGPDTCGSE ILNSPCQNSQ 540 STLSISEAPK LKENELGEHV VQLENLTKNF AHTTNLDHTL NKAVRITRKG GEAYDVSPSL 600 FVIGSSRIDE RPKPNPVWCG SESIGGFSGL RLPIGARGIR KPQPKTSFFR PKKVCHVFPS 660 SPSTPPRFNR PISNPTQHTH ARSIAFASAP RRRLHRRRLL ISSHRSMAPR KFFIGGNWKC 720 NGTSDDVKKI VTVLNEAEVP SEDVVEVVVS PPFVFLPQVK GLLRPDFSVA AQNCWVRKGG 780 AFTGEISAEM LVNLQVPWVI LGHSERRALL GESNDFVADK VAYALSQGIK VIACIGETLE 840 QREAGTTMEV VAAQTKAIAE KISDWTNVVL AYEPVWAIGT GKVATPAQAQ EVHDGLRKWL 900 ESNVSPAVAE STRIIYGGSV NGANCKELAA KPDVDGFLVG GASLKPEFVE IIKSATVKSS 960 A |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6cg9_A | 1e-146 | 710 | 960 | 6 | 256 | Triosephosphate isomerase, cytosolic |
6cg9_B | 1e-146 | 710 | 960 | 6 | 256 | Triosephosphate isomerase, cytosolic |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 432 | 437 | RRKRDK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in abiotic stress responses (PubMed:17293435, PubMed:19279197). May play a regulatory role in tolerance to salt, cold, and drought stresses (PubMed:17293435). Transcriptional activator that binds specifically to a mitosis-specific activator cis-element 5'-(T/C)C(T/C)AACGG(T/C)(T/C)A-3', found in promoters of cyclin genes such as CYCB1-1 and KNOLLE (AC Q84R43). Positively regulates a subset of G2/M phase-specific genes, including CYCB1-1, CYCB2-1, CYCB2-2, and CDC20.1 in response to cold treatment (PubMed:19279197). {ECO:0000269|PubMed:17293435, ECO:0000269|PubMed:19279197}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR01G31650.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by cold, drought and salt stresses. {ECO:0000269|PubMed:17293435}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK059805 | 0.0 | AK059805.1 Oryza sativa Japonica Group cDNA clone:006-204-G07, full insert sequence. | |||
GenBank | AK099310 | 0.0 | AK099310.1 Oryza sativa Japonica Group cDNA clone:J023143L20, full insert sequence. | |||
GenBank | AK100708 | 0.0 | AK100708.1 Oryza sativa Japonica Group cDNA clone:J023115C24, full insert sequence. | |||
GenBank | AK104017 | 0.0 | AK104017.1 Oryza sativa Japonica Group cDNA clone:001-007-G07, full insert sequence. | |||
GenBank | JQ650258 | 0.0 | JQ650258.1 Oryza sativa Indica Group triosephosphate isomerase (TPI) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006644989.1 | 0.0 | PREDICTED: myb-related protein B | ||||
Swissprot | Q0JHU7 | 0.0 | MB3R2_ORYSJ; Transcription factor MYB3R-2 | ||||
TrEMBL | A0A0D9V7M9 | 0.0 | A0A0D9V7M9_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR01G31650.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3099 | 38 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G02320.2 | 1e-111 | myb domain protein 3r-5 |
Publications ? help Back to Top | |||
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