PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G31230.3
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NF-YB
Protein Properties Length: 170aa    MW: 18168.6 Da    PI: 8.6348
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G31230.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB176.42.8e-5519112194
            NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 
                      vreqdrflPian+srimkk++Pan+ki+kdaket+qecvsefisfvtseasdkcq+ekrkting+dll+a++tlGfe+yv+plk+yl+kyre +
  LPERR01G31230.3  19 VREQDRFLPIANISRIMKKAVPANGKIAKDAKETLQECVSEFISFVTSEASDKCQKEKRKTINGEDLLYAMGTLGFEEYVDPLKIYLHKYREGD 112
                      69*****************************************************************************************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.9E-5218120IPR009072Histone-fold
SuperFamilySSF471134.04E-3922117IPR009072Histone-fold
PfamPF008084.1E-282589IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006157.2E-225371No hitNo description
PROSITE patternPS0068505672IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006157.2E-227290No hitNo description
PRINTSPR006157.2E-2291109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006412Biological Processtranslation
GO:0005634Cellular Componentnucleus
GO:0022627Cellular Componentcytosolic small ribosomal subunit
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MADVGSHDES GSPPRGGMVR EQDRFLPIAN ISRIMKKAVP ANGKIAKDAK ETLQECVSEF  60
ISFVTSEASD KCQKEKRKTI NGEDLLYAMG TLGFEEYVDP LKIYLHKYRE GDSKLSSKAG  120
DGSVKKEGIG PHGGAGSSSA QGMVGAYAQG MGYMQPQLGY VTKTGKANIG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_B2e-4820110494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A2e-4820110494NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4g91_B2e-4819110192Transcription factor HapC (Eurofung)
4g92_B2e-4819110192Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. May regulate the expression of photosynthetic genes, and may be involved in chloroplast and amyloplast development. {ECO:0000269|PubMed:14617083}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G31230.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0954381e-169AB095438.1 Oryza sativa Japonica Group OsHAP3A mRNA for HAP3, complete cds.
GenBankAY3324661e-169AY332466.1 Oryza sativa (japonica cultivar-group) CCAAT-binding protein (CCB1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611523.11e-94nuclear transcription factor Y subunit B-2 isoform X2
SwissprotQ5QMG34e-95NFYB2_ORYSJ; Nuclear transcription factor Y subunit B-2
TrEMBLA0A0D9V7H91e-121A0A0D9V7H9_9ORYZ; Uncharacterized protein
STRINGLPERR01G31230.11e-120(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38880.74e-65nuclear factor Y, subunit B1