PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR01G30370.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

WOX

Protein Properties

Length: 270aa MW: 30391.9 Da PI: 6.3525

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR01G30370.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	68.4	9.1e-22	93	153	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + n +ps+++++e++++l +++e++V++WFqNrRa+ k+ LPERR01G30370.1 93 RQRWTPTPMQLQILENIFDQgNGTPSKQKIKEITAELsqhgQISETNVYNWFQNRRARSKR 153 89***************99************************************97 PP
2	Wus_type_Homeobox	104.1	9.2e-34	92	155	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPtp Q++iLe+++++G tP+k++i++itaeL+++G+i+++NV++WFQNr+aR+++kq LPERR01G30370.1 92 ARQRWTPTPMQLQILENIFDQGNGTPSKQKIKEITAELSQHGQISETNVYNWFQNRRARSKRKQ 155 789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.3E-18	88	158	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.094	89	154	IPR001356	Homeobox domain
SMART	SM00389	5.1E-15	91	158	IPR001356	Homeobox domain
SuperFamily	SSF46689	6.42E-19	92	156	IPR009057	Homeodomain-like
CDD	cd00086	1.46E-14	93	155	No hit	No description
Pfam	PF00046	1.5E-19	93	153	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MEWDKAKASA AAGETAAVDD RGGGEALGYV KVMTDEQMEV LRKQISIYAT ICEQLVEMHR 60 ALTAQQDSIA GMRLGNLYCD PLMVPGGHKI TARQRWTPTP MQLQILENIF DQGNGTPSKQ 120 KIKEITAELS QHGQISETNV YNWFQNRRAR SKRKQAALPN NNAESEAEAD EESPTDKKPK 180 SDRPLHQSIA MRDHGTERVS ETHHFDVEHE QIRRMMYASN DSSSRSSGSL GQMSFYDNVM 240 SNPRIDHFLG KVESPGSFPH MRSGESFDMY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	146	154	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00669	PBM	Transfer from GRMZM2G038252	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR01G30370.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK068585	0.0	AK068585.1 Oryza sativa Japonica Group cDNA clone:J013151P17, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006644908.1	1e-172	PREDICTED: WUSCHEL-related homeobox 8
Swissprot	Q5QMM3	1e-169	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A0D9V759	0.0	A0A0D9V759_9ORYZ; Uncharacterized protein
STRING	LPERR01G30370.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3898	37	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	6e-70	WUSCHEL related homeobox 13

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]