PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LPERR01G30200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 304aa MW: 34047.6 Da PI: 9.1505 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 171.5 | 2.6e-53 | 21 | 148 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdeelvv+yL++kv++++l++ +i+evd+yk++PwdLp+k+ ++kewyfF++rd+ky++g+r+nra+ +gyWkatg dk+v LPERR01G30200.1 21 LPPGFRFHPTDEELVVHYLCRKVARQPLPV-PIIAEVDLYKLDPWDLPEKALFGRKEWYFFTPRDRKYPNGSRPNRAAGRGYWKATGADKPVAP 113 79****************************.88***************8877899**************************************9 PP NAM 95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128 k + ++vg+kk Lvfy+g+ap+g+ktdW+mheyrl LPERR01G30200.1 114 KgSARTVGIKKALVFYSGKAPRGVKTDWIMHEYRL 148 866778***************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.79E-64 | 17 | 177 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 61.871 | 21 | 177 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.8E-28 | 22 | 148 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 304 aa Download sequence Send to blast |
MEIAATVGGS GRRDAEAELN LPPGFRFHPT DEELVVHYLC RKVARQPLPV PIIAEVDLYK 60 LDPWDLPEKA LFGRKEWYFF TPRDRKYPNG SRPNRAAGRG YWKATGADKP VAPKGSARTV 120 GIKKALVFYS GKAPRGVKTD WIMHEYRLAD TDRAPTAGGK KGSQKLDEWV LCRLYNKKNN 180 WEKVKVEAAQ ANAAARGGKV MDAVAADTMS DSFQTHDSDI DNASAGALQQ QQQQQNGGFV 240 TVKEDYDWFT GLNFDELQPT YMMNHHLQQM QMVNPAVAGH DVGGYLQSMS SPQMKMWQTI 300 LPPF |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-96 | 7 | 183 | 1 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LPERR01G30200.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress (PubMed:18813954, PubMed:20632034). Induced by dehydration, cold stress and methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:20632034}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB028183 | 0.0 | AB028183.1 Oryza sativa mRNA for OsNAC4 protein, complete cds. | |||
GenBank | AY986504 | 0.0 | AY986504.1 Oryza sativa (japonica cultivar-group) NAC protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015623706.1 | 0.0 | NAC domain-containing protein 68 | ||||
Swissprot | Q52QH4 | 0.0 | NAC68_ORYSJ; NAC domain-containing protein 68 | ||||
TrEMBL | A0A0D9V738 | 0.0 | A0A0D9V738_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR01G30200.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5389 | 37 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G63790.1 | 6e-84 | NAC domain containing protein 102 |