PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR01G29920.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | MYB | ||||||||
Protein Properties | Length: 499aa MW: 54357.5 Da PI: 6.2732 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.7 | 9.9e-17 | 43 | 90 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed +lvd+vk++G g+W+++ + g+ R++k+c++rw ++l LPERR01G29920.1 43 KGPWTSAEDAILVDYVKKHGEGNWNAVQKNTGLFRCGKSCRLRWANHL 90 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 21.6 | 5e-07 | 96 | 124 | 1 | 30 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIart 30 +g++T+eE+ l+++++ ++G++ W++ a++ LPERR01G29920.1 96 KGAFTAEEERLIIQLHSKMGNK-WARMAAH 124 799*******************.**99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.715 | 38 | 94 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.6E-25 | 40 | 159 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.1E-14 | 42 | 92 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.6E-15 | 43 | 90 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-23 | 44 | 97 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.22E-11 | 45 | 90 | No hit | No description |
PROSITE profile | PS51294 | 11.187 | 95 | 167 | IPR017930 | Myb domain |
SMART | SM00717 | 7.1E-10 | 95 | 165 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.7E-6 | 96 | 124 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.5E-22 | 98 | 165 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.01E-8 | 98 | 161 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009789 | Biological Process | positive regulation of abscisic acid-activated signaling pathway | ||||
GO:0043068 | Biological Process | positive regulation of programmed cell death | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0045926 | Biological Process | negative regulation of growth | ||||
GO:0048235 | Biological Process | pollen sperm cell differentiation | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 499 aa Download sequence Send to blast |
MYRVKSESDC EMIHQDQMDS PAGDDGGGGS GSPQRGGGPP LKKGPWTSAE DAILVDYVKK 60 HGEGNWNAVQ KNTGLFRCGK SCRLRWANHL RPNLKKGAFT AEEERLIIQL HSKMGNKWAR 120 MAAHTWSYGT IGLSVLHDSK PHKIHKLPGR TDNEIKNYWN TRIKRCQRAG LPIYPTTVCN 180 QSSNEDQQGS SDFDCSENLS NGLLNANGLY LPDFTCDNII ANSEALSYPP HLSAESISNL 240 LGQSFASKNC SFMDQVNQTG MLKQSDDVLP GLSHTINGML SSVDQFSNDS EKLKQAVGFD 300 YLHEANSSSK IIAPFGGALN GSHAFLNGNF SASRPTSGPL KMELPSLQDT ESDPNSWLKY 360 TVAPALQPTE LVDPYLQSPT ATPSVKSECA SPRNSGLLEE LIHEAQALRS GKNQQTSVRS 420 SSSSVGTPCN TTVVSSEFDI CQEYWEEQHP GPFLNDSAPF SGNSFTESTP PVSATSPDIF 480 QLSKVSPGWS LKFFALPSM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-27 | 37 | 165 | 1 | 106 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator of gibberellin-dependent alpha-amylase expression in aleurone cells. Involved in pollen and floral organs development. May bind to the 5'-TAACAAA-3' box of alpha-amylase promoter. {ECO:0000269|PubMed:9150608}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00490 | DAP | Transfer from AT5G06100 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR01G29920.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By gibberellin in aleurone cells. {ECO:0000269|PubMed:9150608}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003247 | 0.0 | AP003247.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0425G02. | |||
GenBank | AP003570 | 0.0 | AP003570.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0432B10. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012609 | 0.0 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015622335.1 | 0.0 | transcription factor GAMYB | ||||
Refseq | XP_015622336.1 | 0.0 | transcription factor GAMYB | ||||
Swissprot | A2WW87 | 0.0 | GAM1_ORYSI; Transcription factor GAMYB | ||||
TrEMBL | A0A0D9V6Z8 | 0.0 | A0A0D9V6Z8_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR01G29920.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3947 | 36 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06100.1 | 3e-76 | myb domain protein 33 |