PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G29910.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 839aa    MW: 94190.5 Da    PI: 7.1773
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G29910.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM67.82.9e-211462463103
              NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeek.ewyfFskrdkkyatgkrknratk.sgyWkatgkdkevls 94 
                      pG+rF P+d el+ +yL++++ g++l++ + ++  ++y+ +P++L +k+ ++ + +wy Fs+r++ky++gkr++r t   g+Wk+t +++++++
  LPERR01G29910.1 146 PGVRFVPSDIELILDYLQPQLYGERLPT-NYVNIDNVYSKHPKELTSKLGHSFEgNWYIFSPRNRKYPRGKRPSRNTGdIGFWKSTSRNEPIYD 238
                      9*************************99.7788889*********96555544459*******************76648************98 PP

              NAM  95 kkgelvglk 103
                          + g k
  LPERR01G29910.1 239 I-VGENGEK 246
                      4.3334444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.97E-26142259IPR003441NAC domain
PROSITE profilePS5100523.215144297IPR003441NAC domain
PfamPF023657.8E-9146241IPR003441NAC domain
PfamPF030161.3E-27510661IPR004263Exostosin-like
PfamPF030168.0E-32678783IPR004263Exostosin-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005794Cellular ComponentGolgi apparatus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 839 aa     Download sequence    Send to blast
MSDDSAWQLD GYHQQHDQTL PEEQHREDLE RLFLTLPPQH HQQQEQHQED WQIQPCVHNH  60
EQLDVTSSYV DQQHMLPQEQ EHYQLTRGGL AQFAPGNQFI LSPSDQQHIL PQEQEHNQLT  120
RGELAQFAPG NQFIPSPSNN KYLRVPGVRF VPSDIELILD YLQPQLYGER LPTNYVNIDN  180
VYSKHPKELT SKLGHSFEGN WYIFSPRNRK YPRGKRPSRN TGDIGFWKST SRNEPIYDIV  240
GENGEKKLND WVLCKITNKE TCNVATKKFQ PHSKKQKVQH VQQPPNQSIV IKEPSESGTA  300
NSSHAEELQQ EMPGFSLAGG DDAMAAAAAA YPTPLRIVPS SHVPDSNCYS MGVTGDMNYF  360
STGVTSGGFA ADEILYLTET QPQNAKRIRV SSFPLFFQCA SAMAGKQFLS MARSRPASPR  420
GLLAGGGLLI LLLFAASYFL LLYPSSPGLV ASPSSGSGSG SAADTAFLAS LDRFLASPPR  480
PSAAAAAPGD LDAAIRAVEE ARLYGGVSPP PLRVYVYEMP SKFTYDLLRL FRDSYRETTN  540
LTSNGSPVHR LVEQHSVDYW LWADLIAPES QRLLKNVIRV QQQEEADIFY IPFFTTISYF  600
LLEKQECKAL YREALKWITD QPAWQRSEGR DHVIPVHHPW SFKSVRKFVK KAIWLLPDMD  660
STGNWYVVLH THLPPFSQGG KIRSKLVTEL KDAEGVVIEE GTAGAEGKAA AQNGMRRSLF  720
CLNPAGDTPS SARLFDAIVS GCIPVIISDE LELPFEGILD YRKIALFVSS SDAVQPGWLV  780
KYLKGIDARR IREMQSNLLK IAGNLVNIKL HIRRSQRVVR ESRSVCTCEC RVGNNTRMF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-1414623617105Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G29910.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2880960.0AK288096.1 Oryza sativa Japonica Group cDNA, clone: J075192C12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006644883.10.0PREDICTED: probable arabinosyltransferase ARAD1
TrEMBLA0A0D9V6Z70.0A0A0D9V6Z7_9ORYZ; Uncharacterized protein
STRINGLPERR01G29910.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP811822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.18e-17NAC domain containing protein 32