PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LPERR01G29910.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 839aa MW: 94190.5 Da PI: 7.1773 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 67.8 | 2.9e-21 | 146 | 246 | 3 | 103 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeek.ewyfFskrdkkyatgkrknratk.sgyWkatgkdkevls 94 pG+rF P+d el+ +yL++++ g++l++ + ++ ++y+ +P++L +k+ ++ + +wy Fs+r++ky++gkr++r t g+Wk+t +++++++ LPERR01G29910.1 146 PGVRFVPSDIELILDYLQPQLYGERLPT-NYVNIDNVYSKHPKELTSKLGHSFEgNWYIFSPRNRKYPRGKRPSRNTGdIGFWKSTSRNEPIYD 238 9*************************99.7788889*********96555544459*******************76648************98 PP NAM 95 kkgelvglk 103 + g k LPERR01G29910.1 239 I-VGENGEK 246 4.3334444 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.97E-26 | 142 | 259 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 23.215 | 144 | 297 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.8E-9 | 146 | 241 | IPR003441 | NAC domain |
Pfam | PF03016 | 1.3E-27 | 510 | 661 | IPR004263 | Exostosin-like |
Pfam | PF03016 | 8.0E-32 | 678 | 783 | IPR004263 | Exostosin-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005794 | Cellular Component | Golgi apparatus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 839 aa Download sequence Send to blast |
MSDDSAWQLD GYHQQHDQTL PEEQHREDLE RLFLTLPPQH HQQQEQHQED WQIQPCVHNH 60 EQLDVTSSYV DQQHMLPQEQ EHYQLTRGGL AQFAPGNQFI LSPSDQQHIL PQEQEHNQLT 120 RGELAQFAPG NQFIPSPSNN KYLRVPGVRF VPSDIELILD YLQPQLYGER LPTNYVNIDN 180 VYSKHPKELT SKLGHSFEGN WYIFSPRNRK YPRGKRPSRN TGDIGFWKST SRNEPIYDIV 240 GENGEKKLND WVLCKITNKE TCNVATKKFQ PHSKKQKVQH VQQPPNQSIV IKEPSESGTA 300 NSSHAEELQQ EMPGFSLAGG DDAMAAAAAA YPTPLRIVPS SHVPDSNCYS MGVTGDMNYF 360 STGVTSGGFA ADEILYLTET QPQNAKRIRV SSFPLFFQCA SAMAGKQFLS MARSRPASPR 420 GLLAGGGLLI LLLFAASYFL LLYPSSPGLV ASPSSGSGSG SAADTAFLAS LDRFLASPPR 480 PSAAAAAPGD LDAAIRAVEE ARLYGGVSPP PLRVYVYEMP SKFTYDLLRL FRDSYRETTN 540 LTSNGSPVHR LVEQHSVDYW LWADLIAPES QRLLKNVIRV QQQEEADIFY IPFFTTISYF 600 LLEKQECKAL YREALKWITD QPAWQRSEGR DHVIPVHHPW SFKSVRKFVK KAIWLLPDMD 660 STGNWYVVLH THLPPFSQGG KIRSKLVTEL KDAEGVVIEE GTAGAEGKAA AQNGMRRSLF 720 CLNPAGDTPS SARLFDAIVS GCIPVIISDE LELPFEGILD YRKIALFVSS SDAVQPGWLV 780 KYLKGIDARR IREMQSNLLK IAGNLVNIKL HIRRSQRVVR ESRSVCTCEC RVGNNTRMF |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 7e-14 | 146 | 236 | 17 | 105 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LPERR01G29910.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK288096 | 0.0 | AK288096.1 Oryza sativa Japonica Group cDNA, clone: J075192C12, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006644883.1 | 0.0 | PREDICTED: probable arabinosyltransferase ARAD1 | ||||
TrEMBL | A0A0D9V6Z7 | 0.0 | A0A0D9V6Z7_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR01G29910.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8118 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G77450.1 | 8e-17 | NAC domain containing protein 32 |