PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR01G28870.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | C2H2 | ||||||||
Protein Properties | Length: 480aa MW: 50406.2 Da PI: 9.672 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.6 | 0.00019 | 238 | 260 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ Cg+ F ++ L+ H + H LPERR01G28870.1 238 SCHRCGEQFGKWEALEAHHLSkH 260 7*****************99877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE pattern | PS00028 | 0 | 239 | 260 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF56399 | 2.59E-22 | 262 | 473 | No hit | No description |
Gene3D | G3DSA:3.90.228.10 | 8.4E-12 | 286 | 450 | IPR012317 | Poly(ADP-ribose) polymerase, catalytic domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003950 | Molecular Function | NAD+ ADP-ribosyltransferase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 480 aa Download sequence Send to blast |
MGERRRRASA VAGRGEEEKA SAPAVAPAPN VWFALKRSLH CRSEPSEVHV PRPKAVAATG 60 GHLSAIVTKR AAPRSGCSRS IANLRDVIHG SKRHPERPPS CSPRSIGSSE FLNPIAHEVV 120 LSTNSRCELK ITGFGTAGCG GGLVAAAAAA QHEADGDGGV VSSFVGTLRP GTPGPGWSHG 180 ALQYSGSCRG SMRCTPPRSP NLLLDKDGAA ATGAVTAHRA SCEDAVKSGG GKGSGGLSCH 240 RCGEQFGKWE ALEAHHLSKH AVTELVEGDS SRKIVEIICR TSLLKSESSC VRIERVFKVH 300 NTQRTLARFE EYREAVKLKA SKLPKKHPRC LADGNELLRF HGATLSCALG GGGSSSLCAS 360 DKCAVCRIIR HGFSAKKEGK AGVGVFTTST SGRAFESIEA STGGGGNDDA AATRKALLVC 420 RVIAGRVHKP LENLKEFAGQ TGFDSLAGKV GPYSNIEELY LLNPRALLPC FVYNNAGRDH |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR01G28870.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK071014 | 0.0 | AK071014.1 Oryza sativa Japonica Group cDNA clone:J023079O17, full insert sequence. | |||
GenBank | AK104311 | 0.0 | AK104311.1 Oryza sativa Japonica Group cDNA clone:001-017-D01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015635096.1 | 0.0 | uncharacterized protein LOC4327046 | ||||
TrEMBL | A0A0D9V6K8 | 0.0 | A0A0D9V6K8_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR01G28870.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3277 | 28 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27240.1 | 1e-134 | C2H2 family protein |