PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G28210.2
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 246aa    MW: 27242 Da    PI: 8.4868
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G28210.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.44.1e-11108156455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       h +rEr RR+r+ ++++ L+ +lP++    s+K  K  i+  A  YI++L+
  LPERR01G28210.2 108 RHIMRERLRRERLSQGYSDLQAILPTS---ASTKGGKNIIVSAAASYIRELE 156
                      599***********************9...9******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.97E-15103177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.109104155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-10106171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-8108156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-7110161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MNDDDANHPF DFVHDDELLV SLGFLLPPPL PPDHRGSAFS AYQCAASSSE STLSQRYRSA  60
PANVHRRMHG YLRSIDVDVA TVEMQPAAGE HAFEQQAAPS GGGSARFRHI MRERLRRERL  120
SQGYSDLQAI LPTSASTKGG KNIIVSAAAS YIRELEGRKG WLRERNEELK RAPAPPMKPA  180
GAGMVVKVRA ESEFGSMVDV FEVVLRRLKA MEELQVTAIQ SCFCAGGMWM DVAVESKVQR  240
TRVLRM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113118RLRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G28210.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635057.11e-87transcription factor BHLH148-like
TrEMBLA0A0D9V6C70.0A0A0D9V6C7_9ORYZ; Uncharacterized protein
STRINGLPERR01G28210.11e-160(Leersia perrieri)