PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR01G28060.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | LBD | ||||||||
Protein Properties | Length: 244aa MW: 25701 Da PI: 6.7647 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 109.4 | 2.6e-34 | 40 | 154 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf...............paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgv 79 +C aCk+lrr+C+++Cv+ap+f ++ +++fa+vh++FGasnv kll+++p r+da+++++yeA+ar+ dPvyG+vg+ LPERR01G28060.1 40 PCGACKFLRRRCVPGCVFAPHFsgcggsgvgagagrgRERGAAEFAAVHRVFGASNVAKLLSRVPAALRRDAARTVCYEAQARIADPVYGSVGT 133 7*******************************9988555559**************************************************** PP DUF260 80 ilklqqqleqlkaelallkee 100 il+lq+q++ l+ +l++l+++ LPERR01G28060.1 134 ILALQHQVSVLQGQLSVLESQ 154 ***************999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 20.638 | 39 | 155 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.6E-38 | 40 | 152 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MHAAQPTGSS KRRVGAAPAV ERPAAAEEEE ASSSAGPGAP CGACKFLRRR CVPGCVFAPH 60 FSGCGGSGVG AGAGRGRERG AAEFAAVHRV FGASNVAKLL SRVPAALRRD AARTVCYEAQ 120 ARIADPVYGS VGTILALQHQ VSVLQGQLSV LESQLFNLRL ALASAHPDTP QHFVVLQPAC 180 SAASTPNQVA VNYDDLPQAV DFMDAEPALR GIETLQLSQP LRREEDESCQ DMNLFAESVE 240 QRQL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-33 | 31 | 156 | 2 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-33 | 31 | 156 | 2 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR01G28060.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK242468 | 0.0 | AK242468.1 Oryza sativa Japonica Group cDNA, clone: J080302F02, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015630092.1 | 1e-123 | LOB domain-containing protein 20 | ||||
Swissprot | Q9SRV3 | 3e-46 | LBD20_ARATH; LOB domain-containing protein 20 | ||||
TrEMBL | A0A0D9V6A3 | 1e-174 | A0A0D9V6A3_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR01G28060.1 | 1e-175 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14085 | 25 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03760.1 | 6e-39 | LOB domain-containing protein 20 |