PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G27270.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family CPP
Protein Properties Length: 624aa    MW: 67640.8 Da    PI: 8.9734
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G27270.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR40.94.1e-13159197241
              TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                      +kk CnCk+skClk+YCeCfa+g++C+  C+C++C+N+ +
  LPERR01G27270.1 159 KKKCCNCKHSKCLKLYCECFASGVYCDG-CNCSNCFNNVK 197
                      799*************************.********987 PP
2TCR50.83.3e-16243282140
              TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                      k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  LPERR01G27270.1 243 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 282
                      589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.8E-14158198IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.847159283IPR005172CRC domain
PfamPF036381.7E-9160195IPR005172CRC domain
SMARTSM011148.4E-20243284IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.2E-12246281IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 624 aa     Download sequence    Send to blast
MAGKEQGGGG GQPPPQPPRA PVPAASSQPP IKKLVRQLDF TSAALAGNPA MAAAAAAVSR  60
ALQPRAVPVG FPQPQQLRAA VPMGVPHQLH PRGLPMMRSH HVVHVPHPRP AVAVAVPVPQ  120
VRPAQPQPAP RPPVAVPLKP ESPKPRARLY EGKDGTPTKK KCCNCKHSKC LKLYCECFAS  180
GVYCDGCNCS NCFNNVKNET ARREAIDATL ERNPDAFRPK IGSSPHANRN NMEATGDLPL  240
VGKHNKGCHC KKSGCLKKYC ECFQANILCS ENCKCMDCKN FEGSEERRAV FHGDHKNSIH  300
MQQAANAAVN GAIGAVAISS PSTSRKRKHI DPSVDHSAKE NGAHRISHLP QNFYQKNGMP  360
SDSPFPISQP VHPPTMGPFK VTYRPLLADI VQPEDVKDLC KLLVVVSGKA AKAHTGKKAQ  420
EDKVVEKEEG IGGKREDEMG VSLASTNHDR EENSNSNHQN VSTDNPSTGG TNAGKSSLEE  480
SKHDCIDDQK SNRPMSPGTL ALMCDEQDTM FTTSQNVVTQ QAAPVNQNQS EVYAEQERCV  540
LTEFRDCLRK LVTYGRMKEE KYSMAIKSEM PGHPMQANGV SRIPYSKEVD APVVKTFLQS  600
SSRHPVAGNS ATGHLDKKPK HENT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-2916329214132Protein lin-54 homolog
5fd3_B1e-2916329214132Protein lin-54 homolog
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00045PBMTransfer from AT4G29000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G27270.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1221120.0AK122112.1 Oryza sativa Japonica Group cDNA clone:J033127O09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015621699.10.0protein tesmin/TSO1-like CXC 5 isoform X1
TrEMBLA0A0D9V5Y40.0A0A0D9V5Y4_9ORYZ; Uncharacterized protein
STRINGLPERR01G27270.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47303657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-117Tesmin/TSO1-like CXC domain-containing protein