PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR01G26900.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | TCP | ||||||||
Protein Properties | Length: 438aa MW: 46603.9 Da PI: 6.8005 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 106.5 | 4.3e-33 | 111 | 231 | 1 | 89 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........ssssaseceaesssssasnss 86 aag+kdrhsk++T++g+RdRRvRl a++a+rf+d+qd+LG+d++sk+++WL+++ak+ai++l++ +++++se ++++ +++ LPERR01G26900.1 111 AAGRKDRHSKVCTARGLRDRRVRLAAHTAIRFYDVQDRLGYDRPSKAVDWLMRNAKAAIDDLPDRaeaapppaGTTTESEPQPDQATTEQA--- 201 689**************************************************************77655555222222222222222221... PP TCP 87 sg............................k 89 + + LPERR01G26900.1 202 -TstsygfggnngagamttfphslgdaagaD 231 .011223444445555555544444444441 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 8.4E-31 | 113 | 226 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 32.444 | 114 | 172 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 438 aa Download sequence Send to blast |
MELSCGGELK LEEDKNQLSK GLDPWAASNP TASASTLHYL LQEKEREQLQ IYQQHGFGSF 60 LQHHHRRQQQ QQPAAARGPG ADGGSSGEST PVAAVDALAT AFGAGRIVRS AAGRKDRHSK 120 VCTARGLRDR RVRLAAHTAI RFYDVQDRLG YDRPSKAVDW LMRNAKAAID DLPDRAEAAP 180 PPAGTTTESE PQPDQATTEQ ATSTSYGFGG NNGAGAMTTF PHSLGDAAGA DRVSDSVKSL 240 FPSSSTAATA AGAGHDEYRG SPPDLLSRTT SSRQPQELCL TLQSNQHHHQ IFGHVSANDH 300 HGMISSAGNW SDHHHSQRMP SSWHAPENST GDGRGGDSYM FAMPARQGLD QSQLFSHGEP 360 LQSSGSGWAV SSSRTWLDPL AVAAIHQHQQ STMAAGQVGF GHLVGSGGGG GGFMGFLAPA 420 AHRIQGEEEN GSEVMRRD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 6e-20 | 119 | 173 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 6e-20 | 119 | 173 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR01G26900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012609 | 1e-147 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015639296.1 | 0.0 | transcription factor PCF7 | ||||
Swissprot | Q8LT05 | 0.0 | PCF7_ORYSJ; Transcription factor PCF7 | ||||
TrEMBL | A0A0D9V5S9 | 0.0 | A0A0D9V5S9_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR01G26900.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12056 | 23 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 1e-37 | TCP family protein |