PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR01G26350.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

HB-PHD

Protein Properties

Length: 1004aa MW: 110219 Da PI: 4.8709

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR01G26350.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	33.2	8.8e-11	809	855	6	52
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 f ++ + L+ +F++++yps++ +e LA++lgLt +qV+ WF R LPERR01G26350.1 809 HFGPTINQKLKVYFKEDPYPSRAIKENLAQELGLTFNQVSKWFSSTR 855 566777789**********************************8776 PP
2	PHD	41.2	3.9e-14	499	554	1	51
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C++Cg+ + +++++lCdg C++ fH+ C++++l e++p g wlC+ C++k LPERR01G26350.1 499 FCAICGSkdVTLKNDIILCDGiCDRGFHQFCINPPLFAEDIPPGdeGWLCPACDCK 554 7****64445****88****************9999*****985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF49503	7.22E-26	24	129	IPR008972	Cupredoxin
Gene3D	G3DSA:2.60.40.420	1.1E-27	24	133	IPR008972	Cupredoxin
PROSITE profile	PS51485	36.929	25	130	IPR003245	Phytocyanin domain
CDD	cd11019	2.42E-49	25	129	No hit	No description
Pfam	PF02298	8.4E-13	35	122	IPR003245	Phytocyanin domain
ProDom	PD003122	8.0E-28	69	132	IPR003245	Phytocyanin domain
SuperFamily	SSF57903	1.79E-14	489	557	IPR011011	Zinc finger, FYVE/PHD-type
Gene3D	G3DSA:3.30.40.10	3.7E-13	496	553	IPR013083	Zinc finger, RING/FYVE/PHD-type
PROSITE profile	PS50016	11.003	497	554	IPR019787	Zinc finger, PHD-finger
Pfam	PF00628	2.1E-11	499	554	IPR019787	Zinc finger, PHD-finger
CDD	cd15504	2.97E-25	499	551	No hit	No description
SMART	SM00249	6.4E-11	499	552	IPR001965	Zinc finger, PHD-type
PROSITE pattern	PS01359	0	500	551	IPR019786	Zinc finger, PHD-type, conserved site
PROSITE profile	PS50071	13.248	801	861	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.6E-11	801	855	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.22E-10	801	859	IPR009057	Homeodomain-like
SMART	SM00389	1.6E-11	804	865	IPR001356	Homeobox domain
CDD	cd00086	3.26E-12	806	859	No hit	No description
Pfam	PF00046	3.2E-8	809	855	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0009055	Molecular Function	electron carrier activity

Sequence ? help Back to Top
Protein Sequence Length: 1004 aa Download sequence Send to blast
MEAPCAAWFM AVLGFAAVVS SSEAYVFYAG GRDGWVVDPS ESFNHWAERN RFQVNDTIVF 60 MHDDEVAGSV LLVTEQDFDA CNTGNPVQRL DDVAAGRSVF RFDRSGPFFF ISGDEDRCQK 120 GQKLYIIVMA VRQMPPSEAP EPAAAGPGSS ESSAGPAFPP TGDAMPPSPF WASPPEYAQA 180 PGRSSLDDFD GEMSRSSTLG APPPMSGAAG LDEVVAGLHH FNRNPIRANS ISGPNRSHVP 240 VERGPSVAVI YMDKETTSDL VLDNGNFGRN AGSAQEPLTA KGKTSGVRNR YKQTDKGGRK 300 GTQISPSKKY ALRSSHSSVR VLRSASKKKN ETPKAPVNDN TAVQQAAKKR KRNKPLKPVH 360 SSLKVLPSAS KRKTKARNEL VNEDVGVQLA VKKRKVGRPP KGETPKDDYL TIRKRVRYIL 420 NRMNYEQSLI QAYASEGWKG QSLEKIRPEK ELERAKVEIL RCKLRIREAF QNLDSLLSEG 480 KLEESLFDSA GEIDSEDIFC AICGSKDVTL KNDIILCDGI CDRGFHQFCI NPPLFAEDIP 540 PGDEGWLCPA CDCKIDCIDV LNELQEVKLS IHDSWEKVFP EAASFANGSK QINASDLPSD 600 DSADNDYNPA LTQGHSVDEE KSSGQDEGEK LDSDDSSEDS ESYENEKSKT SKNGRTVDDL 660 GLPSEDSEDD DFDPEGPDSD KDQNDDPNSD QSDESDFTSD SDDFCGEIAK SCVQDEISGP 720 SSSQIRTVNH ANESAFDSEP NAENLNLAFM ETELEQDMVL PVSSKRQVEA FGKASSDSSD 780 EEEWSGNISE QQTEVLCSNS NGSTSRKRHF GPTINQKLKV YFKEDPYPSR AIKENLAQEL 840 GLTFNQVSKW FSSTRHYSRV AATKKENNLE NHTAEHNNSN TVDTTELRGS NEMMMGKVSV 900 HRNDTVERTG QNNLNESIPL RQDTSCGQGV VVTPTGVNQN CHIVSKEIGS PKCGTRENQG 960 NDSTSNIGTP KVKSAEKTSP GVEHADEARR KAIQRELRKM KTGK

Sequence ? help Back to Top

Protein Sequence Length: 1004 aa Download sequence Send to blast

MEAPCAAWFM AVLGFAAVVS SSEAYVFYAG GRDGWVVDPS ESFNHWAERN RFQVNDTIVF  60
MHDDEVAGSV LLVTEQDFDA CNTGNPVQRL DDVAAGRSVF RFDRSGPFFF ISGDEDRCQK  120
GQKLYIIVMA VRQMPPSEAP EPAAAGPGSS ESSAGPAFPP TGDAMPPSPF WASPPEYAQA  180
PGRSSLDDFD GEMSRSSTLG APPPMSGAAG LDEVVAGLHH FNRNPIRANS ISGPNRSHVP  240
VERGPSVAVI YMDKETTSDL VLDNGNFGRN AGSAQEPLTA KGKTSGVRNR YKQTDKGGRK  300
GTQISPSKKY ALRSSHSSVR VLRSASKKKN ETPKAPVNDN TAVQQAAKKR KRNKPLKPVH  360
SSLKVLPSAS KRKTKARNEL VNEDVGVQLA VKKRKVGRPP KGETPKDDYL TIRKRVRYIL  420
NRMNYEQSLI QAYASEGWKG QSLEKIRPEK ELERAKVEIL RCKLRIREAF QNLDSLLSEG  480
KLEESLFDSA GEIDSEDIFC AICGSKDVTL KNDIILCDGI CDRGFHQFCI NPPLFAEDIP  540
PGDEGWLCPA CDCKIDCIDV LNELQEVKLS IHDSWEKVFP EAASFANGSK QINASDLPSD  600
DSADNDYNPA LTQGHSVDEE KSSGQDEGEK LDSDDSSEDS ESYENEKSKT SKNGRTVDDL  660
GLPSEDSEDD DFDPEGPDSD KDQNDDPNSD QSDESDFTSD SDDFCGEIAK SCVQDEISGP  720
SSSQIRTVNH ANESAFDSEP NAENLNLAFM ETELEQDMVL PVSSKRQVEA FGKASSDSSD  780
EEEWSGNISE QQTEVLCSNS NGSTSRKRHF GPTINQKLKV YFKEDPYPSR AIKENLAQEL  840
GLTFNQVSKW FSSTRHYSRV AATKKENNLE NHTAEHNNSN TVDTTELRGS NEMMMGKVSV  900
HRNDTVERTG QNNLNESIPL RQDTSCGQGV VVTPTGVNQN CHIVSKEIGS PKCGTRENQG  960
NDSTSNIGTP KVKSAEKTSP GVEHADEARR KAIQRELRKM KTGK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	347	354	KKRKRNKP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor involved in the regulation of gibberrelin (GA) signaling. Binds to the 5'-GATC-3' motif of HD16/EL1 promoter. Functions as a positive regulator of GA signaling by suppressing the expression of HD16/EL1, a negative regulator of GA signaling. {ECO:0000269\|PubMed:21951842}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR01G26350.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by gibberellin. {ECO:0000269\|PubMed:21951842}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB081340	0.0	AB081340.1 Oryza sativa Japonica Group HAZ1 mRNA for PHD-finger family homeodomain protein, complete cds.
GenBank	AK101428	0.0	AK101428.1 Oryza sativa Japonica Group cDNA clone:J033038H23, full insert sequence.
GenBank	AK121314	0.0	AK121314.1 Oryza sativa Japonica Group cDNA clone:J023113A13, full insert sequence.
GenBank	FJ940197	0.0	FJ940197.1 Oryza sativa Japonica Group clone KCS150D11 PHD-finger family homeodomain protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006643653.1	0.0	PREDICTED: homeobox protein HOX1A isoform X1
Refseq	XP_006643654.1	0.0	PREDICTED: homeobox protein HOX1A isoform X1
Swissprot	Q8H991	0.0	HAZ1_ORYSJ; Homeobox protein HAZ1
TrEMBL	A0A0D9V5L4	0.0	A0A0D9V5L4_9ORYZ; Uncharacterized protein
STRING	LPERR01G26350.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4393	37	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	8e-79	Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Wen BQ,Xing MQ,Zhang H,Dai C,Xue HW Rice homeobox transcription factor HOX1a positively regulates gibberellin responses by directly suppressing EL1. J Integr Plant Biol, 2011. 53(11): p. 869-78 [PMID:21951842]