PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR01G24890.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

Trihelix

Protein Properties

Length: 323aa MW: 36265.3 Da PI: 7.446

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR01G24890.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	33.6	1.1e-10	63	160	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrt........sessstcpy 81 +Wt++ + aL++ ++ r +r++l++ W evs++ r g+ s qC+++++ l+k+++k+ke+ + + +s s++ y LPERR01G24890.1 63 EWTEDSTFALLDSWGDRFVRAGRRSLRADEWLEVSRVAaaaasRPAGY-YSESQCRNRIDTLRKKFRKEKERLRLAArraerradRPSPSKWIY 155 5**********************************98886444444.5889***************987654201001111455677888 PP trihelix 82 fdqle 86 fd+++ LPERR01G24890.1 156 FDKMQ 160 88876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.3E-15	62	162	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MDEDAAAAAE SRSPSPSSSG ASPSPRTKRR RTDRYAHGFE FAPRPASATA PAPAAPARTS 60 PPEWTEDSTF ALLDSWGDRF VRAGRRSLRA DEWLEVSRVA AAAASRPAGY YSESQCRNRI 120 DTLRKKFRKE KERLRLAARR AERRADRPSP SKWIYFDKMQ SLMSPPSLPL QPPVVTRRRD 180 TQPTPRHSWG LDAAEQMLLL SAGGKAVTRD SGSDAELVEV QINEAGAGKR KDIEMLAESI 240 RKLGDVYERV ESSKRQHIDE MDRMRRDLQR DLELRRREIL EKAQAEIACL CEEDGVESSD 300 LEDREGEGDD NKRIGDDGSD KEA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	254	265	RQHIDEMDRMRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR01G24890.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015623327.1	1e-128	uncharacterized protein LOC4324693
TrEMBL	A0A0D9V501	0.0	A0A0D9V501_9ORYZ; Uncharacterized protein
STRING	LPERR01G24890.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8090	22	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	3e-11	Trihelix family protein