PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LPERR01G24370.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 373aa MW: 40195.5 Da PI: 7.7344 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.6 | 2.9e-18 | 77 | 124 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+lv+++ +G g+W++++r g+ R++k+c++rw +yl LPERR01G24370.1 77 RGLWSPEEDEKLVKYISTHGHGCWSSVPRQAGLQRCGKSCRLRWINYL 124 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.6 | 1.1e-16 | 130 | 173 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T++E+ l++++++ lG++ W+ Ia++++ gRt++++k++w++ LPERR01G24370.1 130 RGSFTQQEEALIIELHRVLGNR-WAQIAKHLP-GRTDNEVKNFWNS 173 89********************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.0E-26 | 69 | 127 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.817 | 72 | 124 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.24E-30 | 75 | 171 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-13 | 76 | 126 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.0E-16 | 77 | 124 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.65E-12 | 80 | 124 | No hit | No description |
PROSITE profile | PS51294 | 26.928 | 125 | 179 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-26 | 128 | 180 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.3E-17 | 129 | 177 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-15 | 130 | 173 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.43E-12 | 132 | 172 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis | ||||
GO:0009901 | Biological Process | anther dehiscence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 373 aa Download sequence Send to blast |
MLLICLPLRC SENGMQAVGV FAQLLPLSLL YNHVTTEKLG VKRDHERELA SRQYTVSESE 60 AREMGHHSCC NRQKVRRGLW SPEEDEKLVK YISTHGHGCW SSVPRQAGLQ RCGKSCRLRW 120 INYLRPDLKR GSFTQQEEAL IIELHRVLGN RWAQIAKHLP GRTDNEVKNF WNSTIKKKLI 180 SQAVGSLHPS PADLYYNILD GAGQSIAAAA AAGCASLNAL DNAAHGLAQS PPSSVHNSAA 240 WATSNFSSHQ QQIFLPGHAV GDLQYAAAVD GEFVRLCRAA EGYQDINGAA GIVGQCKPSD 300 LLAQDGVVAR SCGFPAFVEQ KGAAAAGAFL ADPGMGPVMD FMDAILGSSS TSAASASSAE 360 TFSANTAMQP HWI |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-33 | 77 | 179 | 7 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LPERR01G24370.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK288487 | 0.0 | AK288487.1 Oryza sativa Japonica Group cDNA, clone: J090040H24, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015694862.1 | 1e-175 | PREDICTED: myb-related protein 340-like | ||||
TrEMBL | A0A0D9V4T0 | 0.0 | A0A0D9V4T0_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR01G24370.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12813 | 30 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G13890.2 | 1e-75 | myb domain protein 26 |