PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR01G24260.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

bHLH

Protein Properties

Length: 373aa MW: 37979.1 Da PI: 7.2888

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR01G24260.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	19.4	1.9e-06	274	314	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+r+ +++ L++l+P K++ a++L +A Y+k L LPERR01G24260.1 274 ARLRRERVSDRLRVLQKLVPGG-----SKMDTASMLDEAASYLKFL 314 599***************95.....5**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.411	265	314	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.77E-10	271	319	No hit	No description
SMART	SM00353	4.4E-12	271	320	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.66E-13	271	324	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.6E-10	274	323	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
METFGWAAAA GGGGGQLHDD VYLPRQVVGC GRFELDDAFL GACFGSQLHC GDGGGDDGGF 60 GHGGGGDPLG LLCSGDVFSE GCGGSAHDDD GLLDAALAFS RKLGGGGGGA PAVSNGAMLS 120 SYSGTTTGGN ISSGESNNYS GGGGGCGYDA EVAEVVSPTS TISPTTPSLP HATKRKLYED 180 HPAAAPPRPT TGAAAAKRKA AAATTSITFG RHVPTAGVAG YEPDVEAMAQ VKEMIYRAAA 240 MRPVHLGAAA AAAADQKPRR KNVRISSDPQ TVAARLRRER VSDRLRVLQK LVPGGSKMDT 300 ASMLDEAASY LKFLKSQVQK LETLGTTTTT AKLQQHYYSN SSSSNHGFLG FAANNTTISG 360 YANNSNGNAT KLL

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

METFGWAAAA GGGGGQLHDD VYLPRQVVGC GRFELDDAFL GACFGSQLHC GDGGGDDGGF  60
GHGGGGDPLG LLCSGDVFSE GCGGSAHDDD GLLDAALAFS RKLGGGGGGA PAVSNGAMLS  120
SYSGTTTGGN ISSGESNNYS GGGGGCGYDA EVAEVVSPTS TISPTTPSLP HATKRKLYED  180
HPAAAPPRPT TGAAAAKRKA AAATTSITFG RHVPTAGVAG YEPDVEAMAQ VKEMIYRAAA  240
MRPVHLGAAA AAAADQKPRR KNVRISSDPQ TVAARLRRER VSDRLRVLQK LVPGGSKMDT  300
ASMLDEAASY LKFLKSQVQK LETLGTTTTT AKLQQHYYSN SSSSNHGFLG FAANNTTISG  360
YANNSNGNAT KLL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	256	261	KPRRKN
2	274	279	RLRRER

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the negative regulation of flowering. May be involved in the repression of the flowering factor GI and HD1 by interacting with PIL13 and PIL15 and competing with PRR1. Possesses transactivation activity in yeast. {ECO:0000269\|PubMed:21549224}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR01G24260.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK100208	1e-110	AK100208.1 Oryza sativa Japonica Group cDNA clone:J023042H10, full insert sequence.
GenBank	AK106119	1e-110	AK106119.1 Oryza sativa Japonica Group cDNA clone:001-207-E08, full insert sequence.
GenBank	AP003273	1e-110	AP003273.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0510F09.
GenBank	AP003381	1e-110	AP003381.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0692C11.
GenBank	AP014957	1e-110	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBank	CP012609	1e-110	CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
GenBank	CT831219	1e-110	CT831219.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI223P22, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015629328.1	1e-150	transcription factor LATE FLOWERING-like
Refseq	XP_015629344.1	1e-150	transcription factor LATE FLOWERING-like
Swissprot	A0A0P0WQ90	1e-53	LF_ORYSJ; Transcription factor LATE FLOWERING
TrEMBL	A0A0D9V4R3	0.0	A0A0D9V4R3_9ORYZ; Uncharacterized protein
STRING	LPERR01G24260.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1546	37	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	2e-33	bHLH family protein

Publications ? help Back to Top
Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349] Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15. N Biotechnol, 2011. 28(6): p. 788-97 [PMID:21549224]