PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR01G24020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | MYB | ||||||||
Protein Properties | Length: 310aa MW: 33884.6 Da PI: 6.0781 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.5 | 1.7e-09 | 18 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l++ + ++G g +++ g+ R++k+c++rw +yl LPERR01G24020.1 18 KGLWSPEEDEKLYNHIIRYGVG--TSVVCDPGLQRCGKSCRLRWINYL 63 678*******************..6666677789************97 PP | |||||||
2 | Myb_DNA-binding | 47.4 | 4.6e-15 | 69 | 112 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E++ +v +++ lG++ W+ Ia++++ gRt++++k++w++ LPERR01G24020.1 69 RGSFSQQEEDAIVGLHEILGNR-WSQIASHLP-GRTDNEIKNFWNS 112 899*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-16 | 13 | 66 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 8.792 | 13 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.6E-23 | 16 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-6 | 17 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.1E-7 | 18 | 63 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 23.918 | 64 | 118 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-25 | 67 | 118 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-14 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-13 | 69 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.66E-10 | 71 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 310 aa Download sequence Send to blast |
MGRHACATTA GVQQKLRKGL WSPEEDEKLY NHIIRYGVGT SVVCDPGLQR CGKSCRLRWI 60 NYLRPDLKRG SFSQQEEDAI VGLHEILGNR WSQIASHLPG RTDNEIKNFW NSSLKKKLRQ 120 RGIDPSTHKP ISVSSSASAA ALDTSPQDQK PPATAADGFA VKQHQHQQQV FDPFPVTDSF 180 GVGFDAAGMA LYGHIGGGKD VSAAFLDYSS VLDVSENLGY GESSSNSSNW NCGGAVGAPE 240 VNNALESEAL HWATESKVEP LVGYGGEGDA MEHKFVLPCH GQQEQSMPHF DFDVGRSMVV 300 GDFNDLEYFR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-26 | 16 | 118 | 5 | 108 | B-MYB |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 113 | 119 | LKKKLRQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Possible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR01G24020.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK111782 | 0.0 | AK111782.1 Oryza sativa Japonica Group cDNA clone:J023084H22, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006644576.1 | 0.0 | PREDICTED: myb-related protein Hv33-like | ||||
Swissprot | P20027 | 3e-97 | MYB3_HORVU; Myb-related protein Hv33 | ||||
TrEMBL | A0A0D9V4N2 | 0.0 | A0A0D9V4N2_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR01G24020.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2327 | 33 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09540.1 | 1e-65 | myb domain protein 61 |