PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR01G22650.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | E2F/DP | ||||||||
Protein Properties | Length: 261aa MW: 29215.5 Da PI: 10.4475 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 70.2 | 2.4e-22 | 64 | 140 | 3 | 71 |
E2F_TDP 3 eksLrlltqkflklleksee.givtlnevakeLvse...........dvknkrRRiYDilNVLealnliekkekneirwkg 71 +++Lr +++ + +k+e+ g++t+neva+e+ +e d+kn+rRR+YD++NVL a+++i+k +k+ei+w+g LPERR01G22650.2 64 GWGLREFSKI---VSKKVEAkGRTTYNEVADEIFAElksislnglefDEKNIRRRVYDAFNVLIAIRVIAK-DKKEIKWMG 140 689*******...99999999**************************************************.*******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 2.7E-35 | 60 | 145 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 1.7E-23 | 62 | 140 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 6.3E-18 | 65 | 140 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 6.94E-17 | 65 | 141 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
CDD | cd14458 | 5.06E-27 | 145 | 244 | IPR014889 | Transcription factor DP, C-terminal |
SMART | SM01138 | 1.5E-25 | 147 | 254 | IPR014889 | Transcription factor DP, C-terminal |
SuperFamily | SSF144074 | 8.37E-30 | 148 | 251 | No hit | No description |
Pfam | PF08781 | 4.7E-23 | 149 | 247 | IPR014889 | Transcription factor DP, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007049 | Biological Process | cell cycle | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MAPPCGDAAA AASAAPGLAN LLIRGTAGLP PLPPRSGGNT AGREEGGANR NGKKEKSGAQ 60 RITGWGLREF SKIVSKKVEA KGRTTYNEVA DEIFAELKSI SLNGLEFDEK NIRRRVYDAF 120 NVLIAIRVIA KDKKEIKWMG LTNYRYERIH KLEEVHKELI TRIKNKKKLL QEIEKQFDDL 180 QNITSRNQAR QRPAESANGV CLPFLLIKTS RQARVEIEIS KDSKFARFDF NGTPFTMHDD 240 VSILEDIRRN NIGRSSLSIL P |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_B | 3e-23 | 64 | 141 | 9 | 89 | PROTEIN (TRANSCRIPTION FACTOR DP-2) |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR01G22650.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY224529 | 0.0 | AY224529.1 Oryza sativa (japonica cultivar-group) isolate 21044 DP protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015631692.1 | 1e-159 | transcription factor-like protein DPB isoform X2 | ||||
TrEMBL | A0A0D9V445 | 0.0 | A0A0D9V445_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR01G22650.2 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1283 | 38 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03415.1 | 4e-56 | Transcription factor DP |