PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G22560.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 299aa    MW: 31645.2 Da    PI: 8.2125
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G22560.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM74.33.1e-23181458126
              NAM   8 hPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratk.sgyWkatgkdkevlsk 95 
                      hPtd+el+++yL+++ve+ k++    ++++d+y ++P+dL        ++ ++k wyfF++ + k+  g+r+ ra+   g W++    ++v++ 
  LPERR01G22560.1  18 HPTDHELLTRYLRRHVESGKNPW-AYVHDADVYAADPEDLTGeyppaVASDGSKAWYFFTTVRAKTGGGQRRARAVGdGGCWHSESGARDVVAG 110
                      9*******************999.78**************73367745555778********************6553899***9999**9998 PP

              NAM  96 ....kgelvglkktLvfykgrapkgektdWvmhey 126
                          ++ ++g ++ + f k++ ++ +++ W+m e 
  LPERR01G22560.1 111 argpGSVAIGRRQFFSFVKKEGSRRVRSGWIMVEI 145
                      77777788************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100531.94811167IPR003441NAC domain
SuperFamilySSF1019412.22E-3418167IPR003441NAC domain
PfamPF023651.6E-1318144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MSPSRADEAD SGADLGSHPT DHELLTRYLR RHVESGKNPW AYVHDADVYA ADPEDLTGEY  60
PPAVASDGSK AWYFFTTVRA KTGGGQRRAR AVGDGGCWHS ESGARDVVAG ARGPGSVAIG  120
RRQFFSFVKK EGSRRVRSGW IMVEIGLNLG QQDVPSDELV LCKVYRSPRA PPPAVNRSTA  180
APPPAAAAEK SKTEEAAAPP PVDVKPVVAD AAAPIPDTKI VKAAKEAAAA ATGCKRKADG  240
KSSGARRGKR LCARCQAETS ESDSEAETAV LDNSPRSGDE TADSSDVHVN REAKLLKFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-121816522166Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G22560.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015621657.11e-144NAC domain-containing protein 2
TrEMBLA0A0D9V4330.0A0A0D9V433_9ORYZ; Uncharacterized protein
STRINGLPERR01G22560.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40112972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.26e-14NAC domain containing protein 47