PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR01G22320.4

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

HB-other

Protein Properties

Length: 1607aa MW: 179460 Da PI: 6.6693

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR01G22320.4	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54.7	1.7e-17	45	99	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR +++qle+Le+ ++ ++yps++ r+eL++k+gL++rq ++WF+ rR k++k LPERR01G22320.4 45 KRMMKSPYQLEVLEKTYAVEQYPSETLRAELSAKIGLSDRQLQMWFCHRRLKDRK 99 688999***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.0E-16	30	99	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.7E-16	34	99	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.904	40	100	IPR001356	Homeobox domain
SMART	SM00389	3.1E-15	42	104	IPR001356	Homeobox domain
CDD	cd00086	3.45E-13	45	100	No hit	No description
Pfam	PF00046	2.9E-15	45	99	IPR001356	Homeobox domain
SMART	SM00571	1.3E-14	581	640	IPR018501	DDT domain
PROSITE profile	PS50827	14.52	581	640	IPR018501	DDT domain
Pfam	PF02791	4.9E-15	583	637	IPR018501	DDT domain
Pfam	PF05066	1.3E-15	757	825	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	1.3E-8	877	919	IPR028942	WHIM1 domain
Pfam	PF15613	5.0E-13	1054	1126	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1607 aa Download sequence Send to blast
MDDGDGDGKA PAEAPAAAAA STPPAAAAAA AGSAGASGSG EKTVKRMMKS PYQLEVLEKT 60 YAVEQYPSET LRAELSAKIG LSDRQLQMWF CHRRLKDRKP PTKRQRREEE AAAVPLMPPP 120 PVLPPSALPL ASSELLIRGS SPYDEPLPPP VHSRRGAGRS SAVPRLSGRY YEPVPVMLPP 180 PPMASMQLTP SELRVIHSVE SQLGEPLRED GPVLGIEFEE LPPGSFGAPI AFFPSVEHPF 240 VPNSFAGKRK SMVGNSPLVH PHTGSRAVHE YQFLPEQPSD RDEGASRSRY YDTPVEASKS 300 RMASHTPGSH LLPGSEEAAY AFQGQTSCSG LLPQSGRPEV LPAVPADYEM IQSNSNLSSV 360 PIEGQYGIAG FENTLLPSER RAYNDEDGSR VDRKRKHNEE AKIAKEVEAH ERRIRKELEK 420 QDMMNRKREE QMRKEMERHD RERRKEEDRL LRERQREAER FEREQRREHE RMERFLQKQS 480 RRAEKQRQKE ELRKEKEAAR QKAASARATA RRIAREYMEL MEDEHLELME LAAQSKGTSM 540 LCLDSDTLQQ LDSFRGMLSP FPPERVGLKV PFLIKPWTIS EDNVGKLLMV WKFSITFADV 600 LELSSVTFDE FVQSLHDYDS RLLGELHIAL LKSIIKDIED VSRTPSVALG VNPGGGHPQI 660 VEGAYAWGFN IRSWQRHLNV LTWPEILRQF ALSAGFGPQL KKRNTEDVYY RDDNEGHDGK 720 DVISTLRNGS AAVNAAALMK ERGYTHRRRS RHRLTPGTVK FAAFHVLSLE GSKGLTILEV 780 AERIQKSGLR DLTTSKTPEA SIAAALSRDT KLFERTAPST YCVKSPYRKD PADSEASKIS 840 LDKPSSANTS GDSLVRASSD YHEVARKDKE IDESNQGEPW VQGLTEGDYC DLSVEERLNA 900 LVTLVGVANE GNFIRAVLEE RLESANALKK QMLAEAQVDK RRTKEDFAGR VQYNSNMNLK 960 ADVNQENASE STPTPFRNAD KDNDGNAGVV NNNNEITDHG SNAANTSYER NGLGQDITAT 1020 PETLSIQQYV YADKTRSQLR AYIGHRAEQL FVYRSLPLGQ DRRRNRYWQF STSASPNDPG 1080 SGRIFFESRD GYWRVIDSEE AFDSLVASLD TRGSREAQLH SMLQRIEPTF KEAIKRKQSA 1140 VVEQSAGRYL KNGATEMTRA SHRSEVSIEF GNPSNNLSGV TSDCATAYSD SFKIELGRND 1200 VEKAAISKRA AVFLRWMWGE CNDRKLTCAM EYGKKRCSEL MHSCNYCYQI YLTEERHCSS 1260 CHKIFKSIHN FSDHSSPCEE KRRTDNNWKM QTADPSVPIG MRLLKLQLST IEASIPPEAI 1320 QPSWTDGYRK SWGVKLHSTT SLEEIFQMLT LLEGAIKRDY LSSDFETTTE LLKLNTQDNA 1380 SQNHLGLSGS AAVLPWVPST TAAIALRMLD LDSAVTYIQN QKMERDGGDS MKLPSRFAVK 1440 NTQELEPLES TGFDLYDGRC VAGVVDEEVE EVAGEAEAGV EAEGSQEVLA AHLGSDLRMK 1500 TKPQGRTLVE GVLVVVVVGE DVELLGHGNH LREGADQFPR KICWGALACL AMQSLPVWSL 1560 QGAQVLMSGA WRTEGRTLKS DFTSVNDMRV QSPMGPHKTH MSVTKSL

Sequence ? help Back to Top

Protein Sequence Length: 1607 aa Download sequence Send to blast

MDDGDGDGKA PAEAPAAAAA STPPAAAAAA AGSAGASGSG EKTVKRMMKS PYQLEVLEKT  60
YAVEQYPSET LRAELSAKIG LSDRQLQMWF CHRRLKDRKP PTKRQRREEE AAAVPLMPPP  120
PVLPPSALPL ASSELLIRGS SPYDEPLPPP VHSRRGAGRS SAVPRLSGRY YEPVPVMLPP  180
PPMASMQLTP SELRVIHSVE SQLGEPLRED GPVLGIEFEE LPPGSFGAPI AFFPSVEHPF  240
VPNSFAGKRK SMVGNSPLVH PHTGSRAVHE YQFLPEQPSD RDEGASRSRY YDTPVEASKS  300
RMASHTPGSH LLPGSEEAAY AFQGQTSCSG LLPQSGRPEV LPAVPADYEM IQSNSNLSSV  360
PIEGQYGIAG FENTLLPSER RAYNDEDGSR VDRKRKHNEE AKIAKEVEAH ERRIRKELEK  420
QDMMNRKREE QMRKEMERHD RERRKEEDRL LRERQREAER FEREQRREHE RMERFLQKQS  480
RRAEKQRQKE ELRKEKEAAR QKAASARATA RRIAREYMEL MEDEHLELME LAAQSKGTSM  540
LCLDSDTLQQ LDSFRGMLSP FPPERVGLKV PFLIKPWTIS EDNVGKLLMV WKFSITFADV  600
LELSSVTFDE FVQSLHDYDS RLLGELHIAL LKSIIKDIED VSRTPSVALG VNPGGGHPQI  660
VEGAYAWGFN IRSWQRHLNV LTWPEILRQF ALSAGFGPQL KKRNTEDVYY RDDNEGHDGK  720
DVISTLRNGS AAVNAAALMK ERGYTHRRRS RHRLTPGTVK FAAFHVLSLE GSKGLTILEV  780
AERIQKSGLR DLTTSKTPEA SIAAALSRDT KLFERTAPST YCVKSPYRKD PADSEASKIS  840
LDKPSSANTS GDSLVRASSD YHEVARKDKE IDESNQGEPW VQGLTEGDYC DLSVEERLNA  900
LVTLVGVANE GNFIRAVLEE RLESANALKK QMLAEAQVDK RRTKEDFAGR VQYNSNMNLK  960
ADVNQENASE STPTPFRNAD KDNDGNAGVV NNNNEITDHG SNAANTSYER NGLGQDITAT  1020
PETLSIQQYV YADKTRSQLR AYIGHRAEQL FVYRSLPLGQ DRRRNRYWQF STSASPNDPG  1080
SGRIFFESRD GYWRVIDSEE AFDSLVASLD TRGSREAQLH SMLQRIEPTF KEAIKRKQSA  1140
VVEQSAGRYL KNGATEMTRA SHRSEVSIEF GNPSNNLSGV TSDCATAYSD SFKIELGRND  1200
VEKAAISKRA AVFLRWMWGE CNDRKLTCAM EYGKKRCSEL MHSCNYCYQI YLTEERHCSS  1260
CHKIFKSIHN FSDHSSPCEE KRRTDNNWKM QTADPSVPIG MRLLKLQLST IEASIPPEAI  1320
QPSWTDGYRK SWGVKLHSTT SLEEIFQMLT LLEGAIKRDY LSSDFETTTE LLKLNTQDNA  1380
SQNHLGLSGS AAVLPWVPST TAAIALRMLD LDSAVTYIQN QKMERDGGDS MKLPSRFAVK  1440
NTQELEPLES TGFDLYDGRC VAGVVDEEVE EVAGEAEAGV EAEGSQEVLA AHLGSDLRMK  1500
TKPQGRTLVE GVLVVVVVGE DVELLGHGNH LREGADQFPR KICWGALACL AMQSLPVWSL  1560
QGAQVLMSGA WRTEGRTLKS DFTSVNDMRV QSPMGPHKTH MSVTKSL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269\|PubMed:22694359, ECO:0000269\|PubMed:23872538}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR01G22320.4

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK107129	0.0	AK107129.1 Oryza sativa Japonica Group cDNA clone:002-124-C03, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015616412.1	0.0	homeobox-DDT domain protein RLT2 isoform X1
Swissprot	Q9FFH1	0.0	RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBL	A0A0D9V402	0.0	A0A0D9V402_9ORYZ; Uncharacterized protein
STRING	LPERR01G22320.2	0.0	(Leersia perrieri)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	1e-122	homeobox-1