PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR01G22320.3

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

HB-other

Protein Properties

Length: 1635aa MW: 182734 Da PI: 6.8169

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR01G22320.3	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54.7	1.7e-17	45	99	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR +++qle+Le+ ++ ++yps++ r+eL++k+gL++rq ++WF+ rR k++k LPERR01G22320.3 45 KRMMKSPYQLEVLEKTYAVEQYPSETLRAELSAKIGLSDRQLQMWFCHRRLKDRK 99 688999***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.1E-16	30	99	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.7E-16	34	99	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.904	40	100	IPR001356	Homeobox domain
SMART	SM00389	3.1E-15	42	104	IPR001356	Homeobox domain
CDD	cd00086	3.99E-13	45	100	No hit	No description
Pfam	PF00046	3.0E-15	45	99	IPR001356	Homeobox domain
PROSITE profile	PS50827	14.52	609	668	IPR018501	DDT domain
SMART	SM00571	1.3E-14	609	668	IPR018501	DDT domain
Pfam	PF02791	5.0E-15	611	665	IPR018501	DDT domain
Pfam	PF05066	1.3E-15	785	853	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	1.4E-8	905	947	IPR028942	WHIM1 domain
Pfam	PF15613	5.1E-13	1082	1154	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1635 aa Download sequence Send to blast
MDDGDGDGKA PAEAPAAAAA STPPAAAAAA AGSAGASGSG EKTVKRMMKS PYQLEVLEKT 60 YAVEQYPSET LRAELSAKIG LSDRQLQMWF CHRRLKDRKP PTKRQRREEE AAAVPLMPPP 120 PVLPPSALPL ASSELLIRGS SPYDEPLPPP VHSRRGAGRS SAVPRLSGRY YEPVPVMLPP 180 PPMASMQLTP SELRVIHSVE SQLGEPLRED GPVLGIEFEE LPPGSFGAPI VPEQQKQSVR 240 SYDTKIYSRH DSKLLKASAF FPSVEHPFVP NSFAGKRKSM VGNSPLVHPH TGSRAVHEYQ 300 FLPEQPSDRD EGASRSRYYD TPVEASKSRM ASHTPGSHLL PGSEEAAYAF QGQTSCSGLL 360 PQSGRPEVLP AVPADYEMIQ SNSNLSSVPI EGQYGIAGFE NTLLPSERRA YNDEDGSRVD 420 RKRKHNEEAK IAKEVEAHER RIRKELEKQD MMNRKREEQM RKEMERHDRE RRKEEDRLLR 480 ERQREAERFE REQRREHERM ERFLQKQSRR AEKQRQKEEL RKEKEAARQK AASARATARR 540 IAREYMELME DEHLELMELA AQSKGTSMLC LDSDTLQQLD SFRGMLSPFP PERVGLKVPF 600 LIKPWTISED NVGKLLMVWK FSITFADVLE LSSVTFDEFV QSLHDYDSRL LGELHIALLK 660 SIIKDIEDVS RTPSVALGVN PGGGHPQIVE GAYAWGFNIR SWQRHLNVLT WPEILRQFAL 720 SAGFGPQLKK RNTEDVYYRD DNEGHDGKDV ISTLRNGSAA VNAAALMKER GYTHRRRSRH 780 RLTPGTVKFA AFHVLSLEGS KGLTILEVAE RIQKSGLRDL TTSKTPEASI AAALSRDTKL 840 FERTAPSTYC VKSPYRKDPA DSEASKISLD KPSSANTSGD SLVRASSDYH EVARKDKEID 900 ESNQGEPWVQ GLTEGDYCDL SVEERLNALV TLVGVANEGN FIRAVLEERL ESANALKKQM 960 LAEAQVDKRR TKEDFAGRVQ YNSNMNLKAD VNQENASEST PTPFRNADKD NDGNAGVVNN 1020 NNEITDHGSN AANTSYERNG LGQDITATPE TLSIQQYVYA DKTRSQLRAY IGHRAEQLFV 1080 YRSLPLGQDR RRNRYWQFST SASPNDPGSG RIFFESRDGY WRVIDSEEAF DSLVASLDTR 1140 GSREAQLHSM LQRIEPTFKE AIKRKQSAVV EQSAGRYLKN GATEMTRASH RSEVSIEFGN 1200 PSNNLSGVTS DCATAYSDSF KIELGRNDVE KAAISKRAAV FLRWMWGECN DRKLTCAMEY 1260 GKKRCSELMH SCNYCYQIYL TEERHCSSCH KIFKSIHNFS DHSSPCEEKR RTDNNWKMQT 1320 ADPSVPIGMR LLKLQLSTIE ASIPPEAIQP SWTDGYRKSW GVKLHSTTSL EEIFQMLTLL 1380 EGAIKRDYLS SDFETTTELL KLNTQDNASQ NHLGLSGSAA VLPWVPSTTA AIALRMLDLD 1440 SAVTYIQNQK MERDGGDSMK LPSRFAVKNT QELEPLESTG FDLYDGRCVA GVVDEEVEEV 1500 AGEAEAGVEA EGSQEVLAAH LGSDLRMKTK PQGRTLVEGV LVVVVVGEDV ELLGHGNHLR 1560 EGADQFPRKI CWGALACLAM QSLPVWSLQG AQVLMSGAWR TEGRTLKSDF TSVNDMRVQS 1620 PMGPHKTHMS VTKSL

Sequence ? help Back to Top

Protein Sequence Length: 1635 aa Download sequence Send to blast

MDDGDGDGKA PAEAPAAAAA STPPAAAAAA AGSAGASGSG EKTVKRMMKS PYQLEVLEKT  60
YAVEQYPSET LRAELSAKIG LSDRQLQMWF CHRRLKDRKP PTKRQRREEE AAAVPLMPPP  120
PVLPPSALPL ASSELLIRGS SPYDEPLPPP VHSRRGAGRS SAVPRLSGRY YEPVPVMLPP  180
PPMASMQLTP SELRVIHSVE SQLGEPLRED GPVLGIEFEE LPPGSFGAPI VPEQQKQSVR  240
SYDTKIYSRH DSKLLKASAF FPSVEHPFVP NSFAGKRKSM VGNSPLVHPH TGSRAVHEYQ  300
FLPEQPSDRD EGASRSRYYD TPVEASKSRM ASHTPGSHLL PGSEEAAYAF QGQTSCSGLL  360
PQSGRPEVLP AVPADYEMIQ SNSNLSSVPI EGQYGIAGFE NTLLPSERRA YNDEDGSRVD  420
RKRKHNEEAK IAKEVEAHER RIRKELEKQD MMNRKREEQM RKEMERHDRE RRKEEDRLLR  480
ERQREAERFE REQRREHERM ERFLQKQSRR AEKQRQKEEL RKEKEAARQK AASARATARR  540
IAREYMELME DEHLELMELA AQSKGTSMLC LDSDTLQQLD SFRGMLSPFP PERVGLKVPF  600
LIKPWTISED NVGKLLMVWK FSITFADVLE LSSVTFDEFV QSLHDYDSRL LGELHIALLK  660
SIIKDIEDVS RTPSVALGVN PGGGHPQIVE GAYAWGFNIR SWQRHLNVLT WPEILRQFAL  720
SAGFGPQLKK RNTEDVYYRD DNEGHDGKDV ISTLRNGSAA VNAAALMKER GYTHRRRSRH  780
RLTPGTVKFA AFHVLSLEGS KGLTILEVAE RIQKSGLRDL TTSKTPEASI AAALSRDTKL  840
FERTAPSTYC VKSPYRKDPA DSEASKISLD KPSSANTSGD SLVRASSDYH EVARKDKEID  900
ESNQGEPWVQ GLTEGDYCDL SVEERLNALV TLVGVANEGN FIRAVLEERL ESANALKKQM  960
LAEAQVDKRR TKEDFAGRVQ YNSNMNLKAD VNQENASEST PTPFRNADKD NDGNAGVVNN  1020
NNEITDHGSN AANTSYERNG LGQDITATPE TLSIQQYVYA DKTRSQLRAY IGHRAEQLFV  1080
YRSLPLGQDR RRNRYWQFST SASPNDPGSG RIFFESRDGY WRVIDSEEAF DSLVASLDTR  1140
GSREAQLHSM LQRIEPTFKE AIKRKQSAVV EQSAGRYLKN GATEMTRASH RSEVSIEFGN  1200
PSNNLSGVTS DCATAYSDSF KIELGRNDVE KAAISKRAAV FLRWMWGECN DRKLTCAMEY  1260
GKKRCSELMH SCNYCYQIYL TEERHCSSCH KIFKSIHNFS DHSSPCEEKR RTDNNWKMQT  1320
ADPSVPIGMR LLKLQLSTIE ASIPPEAIQP SWTDGYRKSW GVKLHSTTSL EEIFQMLTLL  1380
EGAIKRDYLS SDFETTTELL KLNTQDNASQ NHLGLSGSAA VLPWVPSTTA AIALRMLDLD  1440
SAVTYIQNQK MERDGGDSMK LPSRFAVKNT QELEPLESTG FDLYDGRCVA GVVDEEVEEV  1500
AGEAEAGVEA EGSQEVLAAH LGSDLRMKTK PQGRTLVEGV LVVVVVGEDV ELLGHGNHLR  1560
EGADQFPRKI CWGALACLAM QSLPVWSLQG AQVLMSGAWR TEGRTLKSDF TSVNDMRVQS  1620
PMGPHKTHMS VTKSL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269\|PubMed:22694359, ECO:0000269\|PubMed:23872538}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR01G22320.3

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK107129	0.0	AK107129.1 Oryza sativa Japonica Group cDNA clone:002-124-C03, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015616412.1	0.0	homeobox-DDT domain protein RLT2 isoform X1
Swissprot	Q9FFH1	0.0	RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBL	A0A0D9V401	0.0	A0A0D9V401_9ORYZ; Uncharacterized protein
STRING	LPERR01G22320.2	0.0	(Leersia perrieri)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.2	1e-122	Homeodomain-like transcriptional regulator