PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR01G22320.2

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

HB-other

Protein Properties

Length: 1656aa MW: 185011 Da PI: 6.7028

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR01G22320.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54.7	1.7e-17	45	99	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR +++qle+Le+ ++ ++yps++ r+eL++k+gL++rq ++WF+ rR k++k LPERR01G22320.2 45 KRMMKSPYQLEVLEKTYAVEQYPSETLRAELSAKIGLSDRQLQMWFCHRRLKDRK 99 688999***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.1E-16	30	99	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.7E-16	34	99	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.904	40	100	IPR001356	Homeobox domain
SMART	SM00389	3.1E-15	42	104	IPR001356	Homeobox domain
CDD	cd00086	3.44E-13	45	100	No hit	No description
Pfam	PF00046	3.0E-15	45	99	IPR001356	Homeobox domain
SMART	SM00571	3.1E-8	630	689	IPR018501	DDT domain
PROSITE profile	PS50827	11.851	630	689	IPR018501	DDT domain
Pfam	PF02791	2.7E-11	638	686	IPR018501	DDT domain
Pfam	PF05066	1.4E-15	806	874	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	1.4E-8	926	968	IPR028942	WHIM1 domain
Pfam	PF15613	5.2E-13	1103	1175	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1656 aa Download sequence Send to blast
MDDGDGDGKA PAEAPAAAAA STPPAAAAAA AGSAGASGSG EKTVKRMMKS PYQLEVLEKT 60 YAVEQYPSET LRAELSAKIG LSDRQLQMWF CHRRLKDRKP PTKRQRREEE AAAVPLMPPP 120 PVLPPSALPL ASSELLIRGS SPYDEPLPPP VHSRRGAGRS SAVPRLSGRY YEPVPVMLPP 180 PPMASMQLTP SELRVIHSVE SQLGEPLRED GPVLGIEFEE LPPGSFGAPI VPEQQKQSVR 240 SYDTKIYSRH DSKLLKASAF FPSVEHPFVP NSFAGKRKSM VGNSPLVHPH TGSRAVHEYQ 300 FLPEQPSDRD EGASRSRYYD TPVEASKSRM ASHTPGSHLL PGSEEAAYAF QGQTSCSGLL 360 PQSGRPEVLP AVPADYEMIQ SNSNLSSVPI EGQYGIAGFE NTLLPSERRA YNDEDGSRVD 420 RKRKHNEEAK IAKEVEAHER RIRKELEKQD MMNRKREEQM RKEMERHDRE RRKEEDRLLR 480 ERQREAERFE REQRREHERM ERFLQKQSRR AEKQRQKEEL RKEKEAARQK AASARATARR 540 IAREYMELME DEHLELMELA AQSKGTSMLC LDSDTLQQLD SFRGMLSPFP PERVGLKVPF 600 LIKPWTISED NVGKLLMIHI LSMQMDTLAS GLYESVGEVW KFSITFADVL ELSSVTFDEF 660 VQSLHDYDSR LLGELHIALL KSIIKDIEDV SRTPSVALGV NPGGGHPQIV EGAYAWGFNI 720 RSWQRHLNVL TWPEILRQFA LSAGFGPQLK KRNTEDVYYR DDNEGHDGKD VISTLRNGSA 780 AVNAAALMKE RGYTHRRRSR HRLTPGTVKF AAFHVLSLEG SKGLTILEVA ERIQKSGLRD 840 LTTSKTPEAS IAAALSRDTK LFERTAPSTY CVKSPYRKDP ADSEASKISL DKPSSANTSG 900 DSLVRASSDY HEVARKDKEI DESNQGEPWV QGLTEGDYCD LSVEERLNAL VTLVGVANEG 960 NFIRAVLEER LESANALKKQ MLAEAQVDKR RTKEDFAGRV QYNSNMNLKA DVNQENASES 1020 TPTPFRNADK DNDGNAGVVN NNNEITDHGS NAANTSYERN GLGQDITATP ETLSIQQYVY 1080 ADKTRSQLRA YIGHRAEQLF VYRSLPLGQD RRRNRYWQFS TSASPNDPGS GRIFFESRDG 1140 YWRVIDSEEA FDSLVASLDT RGSREAQLHS MLQRIEPTFK EAIKRKQSAV VEQSAGRYLK 1200 NGATEMTRAS HRSEVSIEFG NPSNNLSGVT SDCATAYSDS FKIELGRNDV EKAAISKRAA 1260 VFLRWMWGEC NDRKLTCAME YGKKRCSELM HSCNYCYQIY LTEERHCSSC HKIFKSIHNF 1320 SDHSSPCEEK RRTDNNWKMQ TADPSVPIGM RLLKLQLSTI EASIPPEAIQ PSWTDGYRKS 1380 WGVKLHSTTS LEEIFQMLTL LEGAIKRDYL SSDFETTTEL LKLNTQDNAS QNHLGLSGSA 1440 AVLPWVPSTT AAIALRMLDL DSAVTYIQNQ KMERDGGDSM KLPSRFAVKN TQELEPLEST 1500 GFDLYDGRCV AGVVDEEVEE VAGEAEAGVE AEGSQEVLAA HLGSDLRMKT KPQGRTLVEG 1560 VLVVVVVGED VELLGHGNHL REGADQFPRK ICWGALACLA MQSLPVWSLQ GAQVLMSGAW 1620 RTEGRTLKSD FTSVNDMRVQ SPMGPHKTHM SVTKSL

Sequence ? help Back to Top

Protein Sequence Length: 1656 aa Download sequence Send to blast

MDDGDGDGKA PAEAPAAAAA STPPAAAAAA AGSAGASGSG EKTVKRMMKS PYQLEVLEKT  60
YAVEQYPSET LRAELSAKIG LSDRQLQMWF CHRRLKDRKP PTKRQRREEE AAAVPLMPPP  120
PVLPPSALPL ASSELLIRGS SPYDEPLPPP VHSRRGAGRS SAVPRLSGRY YEPVPVMLPP  180
PPMASMQLTP SELRVIHSVE SQLGEPLRED GPVLGIEFEE LPPGSFGAPI VPEQQKQSVR  240
SYDTKIYSRH DSKLLKASAF FPSVEHPFVP NSFAGKRKSM VGNSPLVHPH TGSRAVHEYQ  300
FLPEQPSDRD EGASRSRYYD TPVEASKSRM ASHTPGSHLL PGSEEAAYAF QGQTSCSGLL  360
PQSGRPEVLP AVPADYEMIQ SNSNLSSVPI EGQYGIAGFE NTLLPSERRA YNDEDGSRVD  420
RKRKHNEEAK IAKEVEAHER RIRKELEKQD MMNRKREEQM RKEMERHDRE RRKEEDRLLR  480
ERQREAERFE REQRREHERM ERFLQKQSRR AEKQRQKEEL RKEKEAARQK AASARATARR  540
IAREYMELME DEHLELMELA AQSKGTSMLC LDSDTLQQLD SFRGMLSPFP PERVGLKVPF  600
LIKPWTISED NVGKLLMIHI LSMQMDTLAS GLYESVGEVW KFSITFADVL ELSSVTFDEF  660
VQSLHDYDSR LLGELHIALL KSIIKDIEDV SRTPSVALGV NPGGGHPQIV EGAYAWGFNI  720
RSWQRHLNVL TWPEILRQFA LSAGFGPQLK KRNTEDVYYR DDNEGHDGKD VISTLRNGSA  780
AVNAAALMKE RGYTHRRRSR HRLTPGTVKF AAFHVLSLEG SKGLTILEVA ERIQKSGLRD  840
LTTSKTPEAS IAAALSRDTK LFERTAPSTY CVKSPYRKDP ADSEASKISL DKPSSANTSG  900
DSLVRASSDY HEVARKDKEI DESNQGEPWV QGLTEGDYCD LSVEERLNAL VTLVGVANEG  960
NFIRAVLEER LESANALKKQ MLAEAQVDKR RTKEDFAGRV QYNSNMNLKA DVNQENASES  1020
TPTPFRNADK DNDGNAGVVN NNNEITDHGS NAANTSYERN GLGQDITATP ETLSIQQYVY  1080
ADKTRSQLRA YIGHRAEQLF VYRSLPLGQD RRRNRYWQFS TSASPNDPGS GRIFFESRDG  1140
YWRVIDSEEA FDSLVASLDT RGSREAQLHS MLQRIEPTFK EAIKRKQSAV VEQSAGRYLK  1200
NGATEMTRAS HRSEVSIEFG NPSNNLSGVT SDCATAYSDS FKIELGRNDV EKAAISKRAA  1260
VFLRWMWGEC NDRKLTCAME YGKKRCSELM HSCNYCYQIY LTEERHCSSC HKIFKSIHNF  1320
SDHSSPCEEK RRTDNNWKMQ TADPSVPIGM RLLKLQLSTI EASIPPEAIQ PSWTDGYRKS  1380
WGVKLHSTTS LEEIFQMLTL LEGAIKRDYL SSDFETTTEL LKLNTQDNAS QNHLGLSGSA  1440
AVLPWVPSTT AAIALRMLDL DSAVTYIQNQ KMERDGGDSM KLPSRFAVKN TQELEPLEST  1500
GFDLYDGRCV AGVVDEEVEE VAGEAEAGVE AEGSQEVLAA HLGSDLRMKT KPQGRTLVEG  1560
VLVVVVVGED VELLGHGNHL REGADQFPRK ICWGALACLA MQSLPVWSLQ GAQVLMSGAW  1620
RTEGRTLKSD FTSVNDMRVQ SPMGPHKTHM SVTKSL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR01G22320.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK107129	0.0	AK107129.1 Oryza sativa Japonica Group cDNA clone:002-124-C03, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015616412.1	0.0	homeobox-DDT domain protein RLT2 isoform X1
TrEMBL	A0A0D9V400	0.0	A0A0D9V400_9ORYZ; Uncharacterized protein
STRING	LPERR01G22320.2	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2283	33	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.2	1e-117	Homeodomain-like transcriptional regulator