PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR01G22320.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

HB-other

Protein Properties

Length: 1631aa MW: 182229 Da PI: 6.6957

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR01G22320.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54.7	1.7e-17	45	99	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR +++qle+Le+ ++ ++yps++ r+eL++k+gL++rq ++WF+ rR k++k LPERR01G22320.1 45 KRMMKSPYQLEVLEKTYAVEQYPSETLRAELSAKIGLSDRQLQMWFCHRRLKDRK 99 688999***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.1E-16	30	99	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.7E-16	34	99	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.904	40	100	IPR001356	Homeobox domain
SMART	SM00389	3.1E-15	42	104	IPR001356	Homeobox domain
CDD	cd00086	3.79E-13	45	100	No hit	No description
Pfam	PF00046	3.0E-15	45	99	IPR001356	Homeobox domain
SMART	SM00571	3.1E-8	605	664	IPR018501	DDT domain
PROSITE profile	PS50827	11.851	605	664	IPR018501	DDT domain
Pfam	PF02791	2.7E-11	613	661	IPR018501	DDT domain
Pfam	PF05066	1.3E-15	781	849	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	1.4E-8	901	943	IPR028942	WHIM1 domain
Pfam	PF15613	5.1E-13	1078	1150	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1631 aa Download sequence Send to blast
MDDGDGDGKA PAEAPAAAAA STPPAAAAAA AGSAGASGSG EKTVKRMMKS PYQLEVLEKT 60 YAVEQYPSET LRAELSAKIG LSDRQLQMWF CHRRLKDRKP PTKRQRREEE AAAVPLMPPP 120 PVLPPSALPL ASSELLIRGS SPYDEPLPPP VHSRRGAGRS SAVPRLSGRY YEPVPVMLPP 180 PPMASMQLTP SELRVIHSVE SQLGEPLRED GPVLGIEFEE LPPGSFGAPI VPEQQKQSVR 240 SYDTKIYSRH DSKLLKASAF FPSVEHPFVP NSFAGKRKSM PSDRDEGASR SRYYDTPVEA 300 SKSRMASHTP GSHLLPGSEE AAYAFQGQTS CSGLLPQSGR PEVLPAVPAD YEMIQSNSNL 360 SSVPIEGQYG IAGFENTLLP SERRAYNDED GSRVDRKRKH NEEAKIAKEV EAHERRIRKE 420 LEKQDMMNRK REEQMRKEME RHDRERRKEE DRLLRERQRE AERFEREQRR EHERMERFLQ 480 KQSRRAEKQR QKEELRKEKE AARQKAASAR ATARRIAREY MELMEDEHLE LMELAAQSKG 540 TSMLCLDSDT LQQLDSFRGM LSPFPPERVG LKVPFLIKPW TISEDNVGKL LMIHILSMQM 600 DTLASGLYES VGEVWKFSIT FADVLELSSV TFDEFVQSLH DYDSRLLGEL HIALLKSIIK 660 DIEDVSRTPS VALGVNPGGG HPQIVEGAYA WGFNIRSWQR HLNVLTWPEI LRQFALSAGF 720 GPQLKKRNTE DVYYRDDNEG HDGKDVISTL RNGSAAVNAA ALMKERGYTH RRRSRHRLTP 780 GTVKFAAFHV LSLEGSKGLT ILEVAERIQK SGLRDLTTSK TPEASIAAAL SRDTKLFERT 840 APSTYCVKSP YRKDPADSEA SKISLDKPSS ANTSGDSLVR ASSDYHEVAR KDKEIDESNQ 900 GEPWVQGLTE GDYCDLSVEE RLNALVTLVG VANEGNFIRA VLEERLESAN ALKKQMLAEA 960 QVDKRRTKED FAGRVQYNSN MNLKADVNQE NASESTPTPF RNADKDNDGN AGVVNNNNEI 1020 TDHGSNAANT SYERNGLGQD ITATPETLSI QQYVYADKTR SQLRAYIGHR AEQLFVYRSL 1080 PLGQDRRRNR YWQFSTSASP NDPGSGRIFF ESRDGYWRVI DSEEAFDSLV ASLDTRGSRE 1140 AQLHSMLQRI EPTFKEAIKR KQSAVVEQSA GRYLKNGATE MTRASHRSEV SIEFGNPSNN 1200 LSGVTSDCAT AYSDSFKIEL GRNDVEKAAI SKRAAVFLRW MWGECNDRKL TCAMEYGKKR 1260 CSELMHSCNY CYQIYLTEER HCSSCHKIFK SIHNFSDHSS PCEEKRRTDN NWKMQTADPS 1320 VPIGMRLLKL QLSTIEASIP PEAIQPSWTD GYRKSWGVKL HSTTSLEEIF QMLTLLEGAI 1380 KRDYLSSDFE TTTELLKLNT QDNASQNHLG LSGSAAVLPW VPSTTAAIAL RMLDLDSAVT 1440 YIQNQKMERD GGDSMKLPSR FAVKNTQELE PLESTGFDLY DGRCVAGVVD EEVEEVAGEA 1500 EAGVEAEGSQ EVLAAHLGSD LRMKTKPQGR TLVEGVLVVV VVGEDVELLG HGNHLREGAD 1560 QFPRKICWGA LACLAMQSLP VWSLQGAQVL MSGAWRTEGR TLKSDFTSVN DMRVQSPMGP 1620 HKTHMSVTKS L

Sequence ? help Back to Top

Protein Sequence Length: 1631 aa Download sequence Send to blast

MDDGDGDGKA PAEAPAAAAA STPPAAAAAA AGSAGASGSG EKTVKRMMKS PYQLEVLEKT  60
YAVEQYPSET LRAELSAKIG LSDRQLQMWF CHRRLKDRKP PTKRQRREEE AAAVPLMPPP  120
PVLPPSALPL ASSELLIRGS SPYDEPLPPP VHSRRGAGRS SAVPRLSGRY YEPVPVMLPP  180
PPMASMQLTP SELRVIHSVE SQLGEPLRED GPVLGIEFEE LPPGSFGAPI VPEQQKQSVR  240
SYDTKIYSRH DSKLLKASAF FPSVEHPFVP NSFAGKRKSM PSDRDEGASR SRYYDTPVEA  300
SKSRMASHTP GSHLLPGSEE AAYAFQGQTS CSGLLPQSGR PEVLPAVPAD YEMIQSNSNL  360
SSVPIEGQYG IAGFENTLLP SERRAYNDED GSRVDRKRKH NEEAKIAKEV EAHERRIRKE  420
LEKQDMMNRK REEQMRKEME RHDRERRKEE DRLLRERQRE AERFEREQRR EHERMERFLQ  480
KQSRRAEKQR QKEELRKEKE AARQKAASAR ATARRIAREY MELMEDEHLE LMELAAQSKG  540
TSMLCLDSDT LQQLDSFRGM LSPFPPERVG LKVPFLIKPW TISEDNVGKL LMIHILSMQM  600
DTLASGLYES VGEVWKFSIT FADVLELSSV TFDEFVQSLH DYDSRLLGEL HIALLKSIIK  660
DIEDVSRTPS VALGVNPGGG HPQIVEGAYA WGFNIRSWQR HLNVLTWPEI LRQFALSAGF  720
GPQLKKRNTE DVYYRDDNEG HDGKDVISTL RNGSAAVNAA ALMKERGYTH RRRSRHRLTP  780
GTVKFAAFHV LSLEGSKGLT ILEVAERIQK SGLRDLTTSK TPEASIAAAL SRDTKLFERT  840
APSTYCVKSP YRKDPADSEA SKISLDKPSS ANTSGDSLVR ASSDYHEVAR KDKEIDESNQ  900
GEPWVQGLTE GDYCDLSVEE RLNALVTLVG VANEGNFIRA VLEERLESAN ALKKQMLAEA  960
QVDKRRTKED FAGRVQYNSN MNLKADVNQE NASESTPTPF RNADKDNDGN AGVVNNNNEI  1020
TDHGSNAANT SYERNGLGQD ITATPETLSI QQYVYADKTR SQLRAYIGHR AEQLFVYRSL  1080
PLGQDRRRNR YWQFSTSASP NDPGSGRIFF ESRDGYWRVI DSEEAFDSLV ASLDTRGSRE  1140
AQLHSMLQRI EPTFKEAIKR KQSAVVEQSA GRYLKNGATE MTRASHRSEV SIEFGNPSNN  1200
LSGVTSDCAT AYSDSFKIEL GRNDVEKAAI SKRAAVFLRW MWGECNDRKL TCAMEYGKKR  1260
CSELMHSCNY CYQIYLTEER HCSSCHKIFK SIHNFSDHSS PCEEKRRTDN NWKMQTADPS  1320
VPIGMRLLKL QLSTIEASIP PEAIQPSWTD GYRKSWGVKL HSTTSLEEIF QMLTLLEGAI  1380
KRDYLSSDFE TTTELLKLNT QDNASQNHLG LSGSAAVLPW VPSTTAAIAL RMLDLDSAVT  1440
YIQNQKMERD GGDSMKLPSR FAVKNTQELE PLESTGFDLY DGRCVAGVVD EEVEEVAGEA  1500
EAGVEAEGSQ EVLAAHLGSD LRMKTKPQGR TLVEGVLVVV VVGEDVELLG HGNHLREGAD  1560
QFPRKICWGA LACLAMQSLP VWSLQGAQVL MSGAWRTEGR TLKSDFTSVN DMRVQSPMGP  1620
HKTHMSVTKS L

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269\|PubMed:22694359, ECO:0000269\|PubMed:23872538}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR01G22320.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK107129	0.0	AK107129.1 Oryza sativa Japonica Group cDNA clone:002-124-C03, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015616412.1	0.0	homeobox-DDT domain protein RLT2 isoform X1
Swissprot	Q9FFH1	0.0	RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBL	A0A0D9V3Z9	0.0	A0A0D9V3Z9_9ORYZ; Uncharacterized protein
STRING	LPERR01G22320.2	0.0	(Leersia perrieri)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	1e-117	homeobox-1