PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G22040.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 364aa    MW: 40926 Da    PI: 7.0163
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G22040.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM50.75.7e-16261608128
              NAM   8 hPtdeelvveyLkkkvegkklelee....vikevdiykvePwdLpk.......kvkaeekewyfFskrdkkyatgkrknratk..sgyWkatgk 88 
                      hP++++l+  yL ++v++++++ ++    +i+e+d+y+++P +L +       k +++ + wyf  + +  +  g+rk r+++  +g W++   
  LPERR01G22040.1  26 HPSEQDLLESYLLPHVASSTVRDKKsppsFIHEADVYTADPAELTRrhapavaKKSGGAEAWYFLGPVRGLKGGGQRKARTVDdgAGCWHSEAG 119
                      8*****************995554445547**************844678765444467799*******9999*******87745778****** PP

              NAM  89 dkevlskkgelvglkktLvfykg.rapkgektdWvmheyrl 128
                       k+vl+++g+  g  +++ f ++ ++ + +++ W+m e +l
  LPERR01G22040.1 120 AKPVLASSGRCLGHLQSFSFLTKdDDGRRVRSGWLMVELSL 160
                      *********************5436777789*****99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100522.67519192IPR003441NAC domain
PfamPF023657.6E-926159IPR003441NAC domain
SuperFamilySSF1019415.89E-2626174IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MAAASSRPRR RCRAPRRRED NEIDEHPSEQ DLLESYLLPH VASSTVRDKK SPPSFIHEAD  60
VYTADPAELT RRHAPAVAKK SGGAEAWYFL GPVRGLKGGG QRKARTVDDG AGCWHSEAGA  120
KPVLASSGRC LGHLQSFSFL TKDDDGRRVR SGWLMVELSL DDNNEVVLSK VYFSPRAHLT  180
TKNHVTAKKR KNLATTASPP PRHRRRRAPS PPEEEEEKKT LPETAPEAEE CGGDEQPSWL  240
EMRVALGFDT TPIDDETRVR DSPWLKDILM PFPVAPSTPP PRSPSPRREP IEMPEIREFF  300
MRGPYLGEPD PPLYQFDPEK LAAAEKQLQL DGDQRGGGVD DRILLELAAQ LEFERYFDLV  360
RSRR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1188206KRKNLATTASPPPRHRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G22040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638896.16e-90uncharacterized protein LOC107276912
TrEMBLA0A0D9V3W40.0A0A0D9V3W4_9ORYZ; Uncharacterized protein
STRINGLPERR01G22040.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40112972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15510.19e-10NAC domain containing protein 2