PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LPERR01G21790.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 239aa MW: 24424.3 Da PI: 6.7359 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 63.5 | 2.5e-20 | 119 | 153 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+nC tt+TplWR+gp+g+k+LCnaCG++y+k+++ LPERR01G21790.1 119 CANCDTTSTPLWRNGPRGPKSLCNACGIRYKKEER 153 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 8.08E-15 | 112 | 154 | No hit | No description |
PROSITE profile | PS50114 | 14.404 | 113 | 149 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.3E-17 | 113 | 153 | IPR013088 | Zinc finger, NHR/GATA-type |
SMART | SM00401 | 4.4E-21 | 113 | 170 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 1.61E-13 | 118 | 150 | No hit | No description |
Pfam | PF00320 | 5.4E-18 | 119 | 153 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 119 | 144 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 239 aa Download sequence Send to blast |
MLHEAAPCTC GLLYGSCGGG CSLLFPSAGD HHHYYKQYCG GEGEHPVGAG GFDGPYGGGG 60 SVDCTLSLGT PSTRRAEAAV AGMPPWDQSS SLQPGCNGPH DMSGPGGGAA AAASAPRRCA 120 NCDTTSTPLW RNGPRGPKSL CNACGIRYKK EERRAAAAAV APTALASDGG VEYAAYGYPR 180 QQQQWGCYGP AVAKAASFGM FSDAAGEVDG PCLPWGLGVM PSSPAFGAVR EMPSLFQYY |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LPERR01G21790.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP003284 | 1e-122 | AP003284.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0671D01. | |||
GenBank | AP014957 | 1e-122 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012609 | 1e-122 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638887.1 | 1e-117 | GATA transcription factor 20 | ||||
TrEMBL | A0A0D9V3T2 | 1e-171 | A0A0D9V3T2_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR01G21790.1 | 1e-172 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1665 | 37 | 102 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G36620.1 | 5e-26 | GATA transcription factor 19 |