PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G20900.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family C3H
Protein Properties Length: 334aa    MW: 36103.5 Da    PI: 7.9554
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G20900.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH474.1e-15260285126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      +ktelC+ + +tG C+yG++C+FaHg
  LPERR01G20900.1 260 FKTELCNKWEETGDCPYGNQCQFAHG 285
                      79***********************9 PP
2zf-CCCH18.92.8e-06298323126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      ykt+ Cr  +++  C+yG rC+F H+
  LPERR01G20900.1 298 YKTAVCRMVLAGDVCPYGHRCHFRHS 323
                      9**********55**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.1E-18254292IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-10256291IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.868259287IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-8259286IPR000571Zinc finger, CCCH-type
PfamPF006425.9E-12260285IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-11293323IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-8293325IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.009297325IPR000571Zinc finger, CCCH-type
SMARTSM003569.5E-5297324IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0003729Molecular FunctionmRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MQEALVSPVR SALELKPFAF GDQRLASSPR YFAGGEDALY RCSSPFSPSF GFSSPSPLAT  60
SVSLSPSSSA SLVDDGDDGG AAADATGQRL QLARLALQYQ EVADRYELCL SHLAVAAEEA  120
AALRRENAEL RVANSDLTRR LALLSGKHSA AVAVADEICR LGRLGEQKTA PASKESTPQK  180
LAVLPKSISV RSTSYLKLNQ QAQTAATPDA HNRKPRTSSN PTNPSSQRAY DGGKKGEEQK  240
EQAAGADDAA ELEVYNQGMF KTELCNKWEE TGDCPYGNQC QFAHGVAELR PVIRHPRYKT  300
AVCRMVLAGD VCPYGHRCHF RHSLTPAERL LLRP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A2e-21260323467Butyrate response factor 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G20900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1086580.0AK108658.1 Oryza sativa Japonica Group cDNA clone:002-148-E11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006646144.11e-180PREDICTED: zinc finger CCCH domain-containing protein 9
SwissprotA2ZVY51e-161C3H9_ORYSJ; Zinc finger CCCH domain-containing protein 9
TrEMBLA0A0D9V3G80.0A0A0D9V3G8_9ORYZ; Uncharacterized protein
STRINGLPERR01G20900.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27753784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.13e-51C3H family protein