PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR01G20480.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | MYB_related | ||||||||
Protein Properties | Length: 85aa MW: 9593.99 Da PI: 9.7286 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27 | 1e-08 | 8 | 52 | 2 | 44 |
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 WT+ +++ +a + + ++ +W+ Iar +g g+++ ++k ++ LPERR01G20480.1 8 AQWTAKQNKQFEQALAVYDKDtpeRWHNIARAVG-GKSPDEVKRYY 52 57********************************.********998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 9.503 | 5 | 60 | IPR017884 | SANT domain |
SMART | SM00717 | 2.2E-6 | 6 | 58 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.5E-6 | 8 | 52 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-7 | 9 | 62 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.91E-13 | 9 | 63 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.15E-7 | 10 | 52 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009630 | Biological Process | gravitropism | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0010114 | Biological Process | response to red light | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 85 aa Download sequence Send to blast |
MASMSMRAQW TAKQNKQFEQ ALAVYDKDTP ERWHNIARAV GGKSPDEVKR YYDLLVQDVK 60 HIEAGKVPFP AYRCLPPPGA AAKGY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 6e-31 | 10 | 74 | 11 | 75 | RADIALIS |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Required for female gametophyte development. {ECO:0000269|PubMed:15634699}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR01G20480.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU969542 | 4e-61 | EU969542.1 Zea mays clone 331755 DNA binding protein mRNA, complete cds. | |||
GenBank | KJ728409 | 4e-61 | KJ728409.1 Zea mays clone pUT6714 MYB-related transcription factor (MYBR41) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015692060.1 | 2e-43 | PREDICTED: LOW QUALITY PROTEIN: protein RADIALIS-like 4 | ||||
Swissprot | Q9SIJ5 | 3e-31 | RADL2_ARATH; Protein RADIALIS-like 2 | ||||
TrEMBL | A0A0D9V3B4 | 3e-57 | A0A0D9V3B4_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR01G20480.1 | 5e-58 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP270 | 38 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.2 | 1e-32 | RAD-like 6 |
Publications ? help Back to Top | |||
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