PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR01G20470.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | MYB_related | ||||||||
Protein Properties | Length: 105aa MW: 11252.3 Da PI: 5.7113 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.1 | 2.3e-09 | 20 | 64 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 WT++ +l+ ++ + + ++ +W+ +ar+mg ++++++++ ++ LPERR01G20470.1 20 VWTKQQNKLFERGLAVYDTDapdRWHNVARYMGGTKSAEEVRRHY 64 7*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 10.394 | 16 | 72 | IPR017884 | SANT domain |
SMART | SM00717 | 1.1E-7 | 17 | 70 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.64E-11 | 19 | 75 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.9E-7 | 20 | 64 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.01E-7 | 21 | 67 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 105 aa Download sequence Send to blast |
MASNSKGSSS ASASAPSSSV WTKQQNKLFE RGLAVYDTDA PDRWHNVARY MGGTKSAEEV 60 RRHYELLYDD VELIEAGRAP FSLGYGATPP AGRGGADASV DVAER |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 2e-20 | 21 | 81 | 11 | 70 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR01G20470.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638756.1 | 8e-40 | protein RADIALIS-like 3 | ||||
Swissprot | Q6NNN0 | 4e-25 | RADL3_ARATH; Protein RADIALIS-like 3 | ||||
TrEMBL | A0A0D9V3B3 | 1e-70 | A0A0D9V3B3_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR01G20470.1 | 2e-71 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP270 | 38 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.2 | 6e-25 | RAD-like 6 |