PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G17450.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 417aa    MW: 43545.3 Da    PI: 5.0986
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G17450.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.55.1e-13230275555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h + Er+RR+++N++f++Lr+llP++      K +K ++L  A +Y+ksL+
  LPERR01G17450.1 230 HMMSERKRREKLNDSFHTLRSLLPPC-----SKKDKTTVLINAAKYLKSLE 275
                      7789*********************9.....699***************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.301225274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-16225292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.61E-12230278No hitNo description
Gene3DG3DSA:4.10.280.104.8E-16230293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-10230275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-12231280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MDDVWCSLDM AAADIAAGIH QPPPPDLHDP TFWPAFADCA ASFIAGDGVA DVGMEDMVVM  60
DDDVSGFLAG PEAEHLMMSS SSPPSSLSST RSLSIDSSGG SMSSFSLDAA AAMANMNIIP  120
NYSAAPVAHG MFSTAGGSGG GSGDHDDAIM RAMMAVISSS SASPSSSGSA SSPTPFSRAQ  180
QPSAMATQQQ LGGHVVVKSS CLAVKPEKAG GGGGRGQEAA ACGNSSQLYH MMSERKRREK  240
LNDSFHTLRS LLPPCSKKDK TTVLINAAKY LKSLETEITE LEGKNGKLER HIEGGAADAA  300
MIRARRAAHQ RAKVQISKAS AAAAEQQQVV NLTVMVMVEC DVVELVLHIL ECLRWMEDIS  360
VLSVDADTYS PQVLLKAIAS IKLQIKGGDW NEASFHEAMT KAANDATLSC APLAITA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1233238ERKRRE
2234239RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G17450.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1063331e-171AK106333.1 Oryza sativa Japonica Group cDNA clone:002-101-F10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630527.11e-157putative transcription factor bHLH041
TrEMBLA0A0D9V2770.0A0A0D9V277_9ORYZ; Uncharacterized protein
STRINGLPERR01G17450.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101743136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.11e-22bHLH family protein