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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | LPERR01G17400.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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| Family | LBD | ||||||||
| Protein Properties | Length: 141aa MW: 15344 Da PI: 4.7724 | ||||||||
| Description | LBD family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | DUF260 | 40.3 | 9.2e-13 | 17 | 70 | 47 | 100 |
DUF260 47 kalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
+++++ +r + m +vy A+ar++dPv Ga+g ++kl+q+l++lkae a+++++
LPERR01G17400.1 17 AETRRRNRIHSMVGIVYTADARVEDPVLGAYGRVQKLRQELARLKAEHAARQQQ 70
5667888999**************************************999987 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF03195 | 2.1E-7 | 19 | 68 | IPR004883 | Lateral organ boundaries, LOB |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 141 aa Download sequence Send to blast |
MERILRSLEA DAAGLNAETR RRNRIHSMVG IVYTADARVE DPVLGAYGRV QKLRQELARL 60 KAEHAARQQQ QETEIVVVQD KEDDERSTAM DPAEPPSGAV DVAAAAEVTS ASGDHEDAAV 120 PPADDAAPPT KRRKPNPKEL D |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | LPERR01G17400.1 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| TrEMBL | A0A0D9V270 | 9e-95 | A0A0D9V270_9ORYZ; Uncharacterized protein | ||||
| STRING | LPERR01G17400.1 | 1e-95 | (Leersia perrieri) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP16910 | 9 | 11 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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