PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR01G17370.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

LBD

Protein Properties

Length: 388aa MW: 42666.6 Da PI: 5.9007

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR01G17370.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	39.3	1.8e-12	14	52	1	39
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGa 39 +CaaC++lrr+C++dC l p+fpa++p++f+n+ + F+ LPERR01G17370.1 14 PCAACAHLRRTCSRDCKLVPHFPADRPERFRNAFRHFRI 52 7**********************************9975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	1.4E-9	14	50	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence Send to blast
MADPSASGSS QYPPCAACAH LRRTCSRDCK LVPHFPADRP ERFRNAFRHF RIGENRDGFD 60 FDNYIGQMNR LSDLRLRLIH EQRRQELLRP QHQPPPPDLP RGLPLADGRA PNSSSSSSGG 120 GPRHPQCAAC AYLGWVCSPE CKLEPYSEAV SLCGLSTSSS TPTASLPQCQ KCGLQRRLCE 180 MGCNLKCMDL SGVKFLLESA KAAFPADSTT TASQYPQSGS SSTTTVDHQR ERHDHRRRLF 240 RAHPLTTDFS AYALRPTPTS PATVHENAES STAKANRSSV FGVLNDPVNE NDPMAAMMES 300 FMSAMNTTHP PPPTTTSTSD DEDIGKYLVD DAYTAEEEPA APAEPVGIDE LPRPMSPMTL 360 ANVRLAKELL EQEEQLVAPP FDERHDDD

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence Send to blast

MADPSASGSS QYPPCAACAH LRRTCSRDCK LVPHFPADRP ERFRNAFRHF RIGENRDGFD  60
FDNYIGQMNR LSDLRLRLIH EQRRQELLRP QHQPPPPDLP RGLPLADGRA PNSSSSSSGG  120
GPRHPQCAAC AYLGWVCSPE CKLEPYSEAV SLCGLSTSSS TPTASLPQCQ KCGLQRRLCE  180
MGCNLKCMDL SGVKFLLESA KAAFPADSTT TASQYPQSGS SSTTTVDHQR ERHDHRRRLF  240
RAHPLTTDFS AYALRPTPTS PATVHENAES STAKANRSSV FGVLNDPVNE NDPMAAMMES  300
FMSAMNTTHP PPPTTTSTSD DEDIGKYLVD DAYTAEEEPA APAEPVGIDE LPRPMSPMTL  360
ANVRLAKELL EQEEQLVAPP FDERHDDD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR01G17370.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0D9V267	0.0	A0A0D9V267_9ORYZ; Uncharacterized protein
STRING	LPERR01G17370.1	0.0	(Leersia perrieri)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	4e-09	LOB domain-containing protein 4