PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR01G17330.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | LBD | ||||||||
Protein Properties | Length: 186aa MW: 20613.9 Da PI: 9.2558 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 44.3 | 5e-14 | 30 | 140 | 2 | 100 |
DUF260 2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeer.............edamsslvyeAearardPvyGavgvilk 82 Ca+C +l+ +C + C apyfpa++ ++f ++ +lFG +++++ l+a + r + m+++v ++a + +P + ++ l+ LPERR01G17330.1 30 CASCTHLGLTCRPRCRTAPYFPADRLERFLYACRLFGLKTIVRSLRAE-ADGRmgecrwfwnksnkTPSMAAIVLLSDAAVAEPERVIRKFELH 122 *********************************************995.333445666777777668899999999999999999999999999 PP DUF260 83 lqqqleqlkaelallkee 100 q++l+++++ l+++ ++ LPERR01G17330.1 123 RQRRLQCKANRLQKQSQQ 140 999999999888887765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 10.345 | 28 | 141 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.1E-11 | 30 | 135 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MSTSTALAPP AGRPPCAART HVDAAPRPTC ASCTHLGLTC RPRCRTAPYF PADRLERFLY 60 ACRLFGLKTI VRSLRAEADG RMGECRWFWN KSNKTPSMAA IVLLSDAAVA EPERVIRKFE 120 LHRQRRLQCK ANRLQKQSQQ PRQQPAMLPD PYAVVAMETV YDSTSDMDAD AGLATCLQML 180 CLSSAA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR01G17330.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0D9V263 | 1e-133 | A0A0D9V263_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR01G17330.1 | 1e-134 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16910 | 9 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 7e-09 | LOB domain-containing protein 22 |