PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR01G15620.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | bHLH | ||||||||
Protein Properties | Length: 137aa MW: 14362.7 Da PI: 7.1338 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 14.7 | 5.7e-05 | 3 | 35 | 18 | 54 |
HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 18 safeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++eL el+P++ ++ s a i+e+A+ ++k+L LPERR01G15620.1 3 RLYAELGELIPNL----PPRASTARIVEEAIAFVKEL 35 5799********6....389***************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 9.826 | 1 | 35 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.44E-5 | 2 | 46 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.6E-4 | 4 | 44 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:3.30.70.260 | 6.9E-4 | 79 | 127 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 137 aa Download sequence Send to blast |
MSRLYAELGE LIPNLPPRAS TARIVEEAIA FVKELRGKAA ELEAYRSVAA VARGGGDGAE 60 VVACGNTSCF AVRLPAAWPG ALTRVVEVFQ RHGVAVLAVA VARDGEEYTA VTVTTAAVAP 120 RILERIKVEI ICAACSV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR01G15620.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025878346.1 | 7e-40 | uncharacterized protein LOC112937659 | ||||
TrEMBL | A0A0D9V1K7 | 5e-90 | A0A0D9V1K7_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR01G15620.1 | 8e-91 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9141 | 19 | 31 |