PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G14420.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 207aa    MW: 22701.7 Da    PI: 11.0601
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G14420.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM224.4e-07481633109
              NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleev..ikev.diykv.ePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                      +Gf+  Pt +elv ++L ++++g +++  +v  i+   d + +  P+dL +    +++ ++ e ++F++r ++ ++  r+   +  g Wk++ +
  LPERR01G14420.1  48 AGFEETPTADELVLRHLLPRLRGFRCPDGDVpaIAAKdDPHAAeAPRDLVArhggRADRRRGEAFYFAPRWRRRRHVLRTVA-AGGGLWKHSST 140
                      699999*******************66655333554436655537****743443333344499******999887777665.588****6554 PP

              NAM  89 ..dkevlskkgelvglkktLvfy 109
                         ++v+  +g + +  +   fy
  LPERR01G14420.1 141 saGESVTFLGGVVLWRATRYCFY 163
                      11445554455555555555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.92E-1445170IPR003441NAC domain
PROSITE profilePS5100510.59446207IPR003441NAC domain
PfamPF023651.9E-448163IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MATVPIRRKP IEVAVKVQEE KEGILEVVDP RPPSTDDQSS QLSPSGVAGF EETPTADELV  60
LRHLLPRLRG FRCPDGDVPA IAAKDDPHAA EAPRDLVARH GGRADRRRGE AFYFAPRWRR  120
RRHVLRTVAA GGGLWKHSST SAGESVTFLG GVVLWRATRY CFYERGDGCG AGIRAPGGGC  180
WSTRSRSRRL TGAPTRRRRT STGFCAT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105121RRRGEAFYFAPRWRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G14420.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637825.11e-38uncharacterized protein LOC107275546
TrEMBLA0A0D9V1621e-145A0A0D9V162_9ORYZ; Uncharacterized protein
STRINGLPERR01G14420.11e-146(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP173721010