PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR01G12180.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family Trihelix
Protein Properties Length: 481aa    MW: 50723.5 Da    PI: 6.7555
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR01G12180.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix73.73e-2329142186
         trihelix   1 rWtkqevlaLiearremeerlrrgk...........................lkkplWeevskkmrergferspkqCkekwenlnkrykkikeg 67 
                      +Wt+++v++Li+++ +++++   g                            +kk++W++vs++m+erg+ +sp+qC++k+++lnkryk++ + 
  LPERR01G12180.1  29 KWTDEMVRLLINVVYSVGDDGDGGVaaaaggggggtkggaaahgkgaaaaqqQKKGKWKSVSRAMMERGYMVSPQQCEDKFNDLNKRYKRVVDL 122
                      7************997766666543334455666666666777777777777****************************************** PP

         trihelix  68 ekkr.tsessstcpyfdqle 86 
                       +++ +++++++++++d ++
  LPERR01G12180.1 123 LGRGtACKVVENHALLDAMD 142
                      ****55************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.4E-1927168No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MGMGNGAAKG GGGGGVVPGS AGCPWTRMKW TDEMVRLLIN VVYSVGDDGD GGVAAAAGGG  60
GGGTKGGAAA HGKGAAAAQQ QKKGKWKSVS RAMMERGYMV SPQQCEDKFN DLNKRYKRVV  120
DLLGRGTACK VVENHALLDA MDELPPKAKD EARKLLSSKH LFFREMCAYH NSGANAHGAP  180
HGGAPHGGSG GGGDACFHHP PPASMAAAAA ASSAARQAAA FAPSPGMKDS SAGADDDDDD  240
SDDVPSSNDI DEDDDDDDDD DEVMKHRTGS GGIQIYGSSH RLHHHHHHNG HHKRRRHGDD  300
VSSAGAGGDD DDDAATGGRK RSRGIASAGG DEDDHGPSPV QQLQSELAAA TAAAGDPQQV  360
RQWVRRRAVE VEEQQVAHDV RAYHLERQRL KWERFRANKE RDMERARLRN DRVRIDGRRM  420
LLLLRQKDLD FDIAEANSSS VDHLPTSSAG PPLSAAAALH PHHQQQIGSS PSAAAAAGHP  480
N
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1317323GRKRSRG
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR01G12180.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880854.11e-146sarcoplasmic reticulum histidine-rich calcium-binding protein
TrEMBLA0A0D9V0960.0A0A0D9V096_9ORYZ; Uncharacterized protein
STRINGLPERR01G12180.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119443138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.18e-44sequence-specific DNA binding transcription factors